Factsheet for GSMUA_Achr10P20740_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P09630_001
GSMUA_Achr2P17520_001
GSMUA_Achr4P21110_001
GSMUA_Achr4P28510_001
GSMUA_Achr7P16760_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19680.1	GSMUA_Achr10P...	AT3G27960.1	21798944
AT1G19680.1	GSMUA_Achr2P09630_001	AT3G27960.1	21798944
AT1G75400.1	GSMUA_Achr2P17520_001	AT3G22960.1	21798944
AT1G75400.1	GSMUA_Achr4P21110_001	AT3G22960.1	21798944
AT1G75400.1	GSMUA_Achr4P28510_001	AT3G22960.1	21798944
AT1G75400.1	GSMUA_Achr7P16760_001	AT3G22960.1	21798944
AT1G75400.1	GSMUA_Achr11P...	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P08950_001	Banana	nucleus	48.04	52.49
GSMUA_Achr4P24550_001	Banana	nucleus	34.57	37.32
KRH05863	Soybean	nucleus	33.7	35.71
VIT_18s0001g13060.t01	Wine grape	nucleus	33.91	35.21
KRH15146	Soybean	nucleus	33.04	35.02
VIT_03s0038g04400.t01	Wine grape	nucleus	33.7	34.07
KRH51797	Soybean	nucleus	31.52	33.56
KRH61121	Soybean	plastid	31.3	32.51
VIT_04s0079g00570.t01	Wine grape	cytosol	8.48	31.45
KRH27444	Soybean	nucleus, plastid	28.48	30.32
KRH20799	Soybean	nucleus	28.91	30.23
PGSC0003DMT400028504	Potato	cytosol, plastid	7.17	30.0
PGSC0003DMT400066093	Potato	nucleus	27.17	29.98
Solyc10g054030.1.1	Tomato	nucleus	26.96	29.81
KRH60799	Soybean	nucleus, plastid	28.04	29.66
KRH51493	Soybean	nucleus	28.04	29.66
CDY47525	Canola	nucleus, plastid	29.78	29.59
CDY69665	Canola	nucleus, plastid	29.35	29.09
AT1G75400.1	Thale cress	plastid	28.7	29.01
CDY39030	Canola	nucleus, plastid	13.26	28.5
AT1G19680.1	Thale cress	nucleus	26.96	27.93
Bra015846.1-P	Field mustard	nucleus	29.78	27.68
CDY13812	Canola	cytosol, nucleus, peroxisome	23.91	27.57
Bra003754.1-P	Field mustard	nucleus, plastid	12.39	27.54
CDX68130	Canola	nucleus, plastid	12.39	27.54
VIT_04s0079g00560.t01	Wine grape	cytosol	9.13	27.1
PGSC0003DMT400089080	Potato	nucleus	26.3	27.07
Solyc01g109910.2.1	Tomato	nucleus	26.74	26.74
CDX82036	Canola	nucleus	23.48	26.73
AT2G21500.2	Thale cress	nucleus	24.35	26.6
Bra008196.1-P	Field mustard	cytosol	13.7	26.47
Bra031193.1-P	Field mustard	nucleus	23.48	26.21
CDY41965	Canola	nucleus	23.26	25.3
Bra011873.1-P	Field mustard	nucleus	23.26	24.71
CDY12123	Canola	nucleus	22.17	24.17
AT4G39140.3	Thale cress	nucleus	22.39	24.01
Bra010702.1-P	Field mustard	nucleus	21.3	23.73
CDX90314	Canola	nucleus	21.3	23.67
CDY42611	Canola	nucleus	21.52	23.57
CDY56767	Canola	cytosol, nucleus, peroxisome, plastid	20.22	23.25
CDX72716	Canola	nucleus	19.13	22.56
Bra033599.1-P	Field mustard	nucleus	19.35	22.42
GSMUA_Achr3P01890_001	Banana	nucleus	13.91	12.28
GSMUA_Achr5P27760_001	Banana	nucleus	15.0	10.95

Protein Annotations

EnsemblPlants:GSMUA_Achr10P20740_001	EnsemblPlants:GSMUA_Achr10T20740_001	EnsemblPlantsGene:GSMUA_Achr10G20740_001	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR31150	PANTHER:PTHR31150:SF18	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000295315E	UniProt:M0RJZ9	MapMan:35.2	:

Description

Putative zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G20740_001]

Coordinates

chr10:+:26596719..26601711

Molecular Weight (calculated)

50332.6 Da

IEP (calculated)

8.539

GRAVY (calculated)

-0.649

Length

460 amino acids

Sequence
(BLAST)

001: MGANCCVAVK DKPLPSPAQF DVSTYRNIRR SPTWSFRWDN RTHIEDAMDN AVQFSHHHSG NVGPQIRSES PTEAESLFVR GSPSDAFHLE KWHESPIRSG
101: SAGKLKDVSA DDQSIKSNSS GKSKGSLMLS YFASAPDVKF SKSVPSTPSS SSYKADPSSS RSCSLPSDPT LSRKACRSPG CQLSWQISDG SRIPSLHSLD
201: ENRKISVSVP STPSSSSFKA DPSSSMSCFV PLDPTSSRRA CRSPGFQLCR QISDSRIPSL QSLNENSSPE GRHSFVLSFR SNELSTGGSH GESSDGWSMR
301: TFSELVASSN RERWSFDSDN LTSSSSKITG SNPQQTTQVS PDQPTCKVCS KLLMEHCVVA VLVCGHIYHA ECLEKMTTEI DRYDPTCPVC THGEKSAAKL
401: FKKAETKARN KLSRIGVADN DPHGDAICDR HKKVGDGPKM VPVLAPNRLL AGFWERYRRE

Best Arabidopsis Sequence Match ( AT1G75400.1 )
(BLAST)

001: MGSVCCVAVK DRKVPPSGGP ASSSVHRNSA CSPQWSFRRD NRRRVADEIE GSPYYSPYVA SRGISMDKMS LGSERGTLSE GGTPPDGHLG TPASQKSATP
101: EMSTNSMVPP SSGSSLASSD LIEVKNLVDS PGIVPSAQSK PLFSTPSLPN PVSDLSSAHT RLLPPKSTPS RRARRSPGHQ LFRQVSDSQI LGLKSPINNY
201: SISEGRSSFV LSTCSNDFAT GSQYASSEGG WSMNTFSELV AYSQRDRWSF DSEHLGSGRR KLSGGSSRFS FSPSVVDQQV CGACSKLLTE RSSIATFELP
301: IAAVLACGHV YHAECLETMT TDIEKYDPAC PICTIGEKRV AKITRKALKA EAEAKAKQYK RCKNRVVDSY GESECDEFVF QKMGKREGKA LKLEASCSSK
401: SSSNKSFLKW HFASISSKWN KPSSKDSALK KGFWSRHRNN RSSSSIEGLN QTSPL

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7K7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.