Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0326300-01 | Rice | nucleus | 29.37 | 41.57 |
| TraesCS6B01G333400.1 | Wheat | nucleus | 29.68 | 40.56 |
| TraesCS6A01G305100.2 | Wheat | nucleus | 29.68 | 40.48 |
| HORVU6Hr1G075350.1 | Barley | nucleus | 29.52 | 40.26 |
| TraesCS6D01G284300.1 | Wheat | nucleus | 29.37 | 40.13 |
| EER92330 | Sorghum | nucleus | 28.89 | 39.39 |
| Zm00001d047558_P001 | Maize | nucleus | 28.25 | 38.78 |
| VIT_08s0007g07610.t01 | Wine grape | nucleus | 19.05 | 32.97 |
| Zm00001d028989_P002 | Maize | endoplasmic reticulum, plasma membrane | 21.43 | 29.35 |
| GSMUA_Achr3P01890_001 | Banana | nucleus | 17.78 | 21.5 |
| GSMUA_Achr4P24550_001 | Banana | nucleus | 13.17 | 19.48 |
| GSMUA_Achr6P08950_001 | Banana | nucleus | 11.11 | 16.63 |
| GSMUA_Achr10P... | Banana | nucleus | 10.95 | 15.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P27760_001 | EnsemblPlants:GSMUA_Achr5T27760_001 | EnsemblPlantsGene:GSMUA_Achr5G27760_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR31150 | PANTHER:PTHR31150:SF9 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | TMHMM:TMhelix | UniParc:UPI00029592C2 | UniProt:M0T2A1 | MapMan:35.2 |
Description
zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G27760_001]
Coordinates
chr5:-:28213482..28218640
Molecular Weight (calculated)
69794.5 Da
IEP (calculated)
9.493
GRAVY (calculated)
-0.408
Length
630 amino acids
Sequence
(BLAST)
(BLAST)
001: MIRFVIRSHG PTAPDVRCRS RDARLAHDNS QNPWEETSAC HVLNYFTLIV IDTPTLSSFL LYILEKFFFA LLFSSSDSPE GRRPTLVIIK VRAFSAPVES
101: LSPPQAALFR ALISARNHLG QFSRCQKLLV NGQVNSFIVL VLEILPAAQV KFYLVLREVR RSSYSFKRGK QSVAPYVQGH RQMNNFMMGA LCCVPVGPHG
201: PKSNTSGRDC SIDPSEPHWR TNSSYSPHLS RRWDCSSQSD ELSNRVHEVP ISGSSMSLHS NVRHIGSSDL NHHHSVSDGA LSYSESPSDY LQARRWTPCV
301: HRYDLGEFST PAGGARPEAS VFSRGSEGGF SAGNSIGSPF SPLESSRWAS TSKQPAFFPR HLPSRRSFMS KPIYPLMFQN PVSEADASGM AEASTSGSRM
401: PREDSGASPM WTERILSSEL KEGFRWSNAS SYDFRFDGDN VDIADTINVE NHRCPSTSRY QKCELCKRSL YQKSPWSSNR IVRSTDMPVA GILPCHHVFH
501: ADCLEETTPK SQIHDPPCPV CLKAVGKEQS TSISEPLHVA LRSACSSQGA GASTGAGTSG HSISHQIEND LRRSSSLATS QRRGSLSRNH SKKRFSFKGK
601: IGMDLLGAKM FRTVKELVRA ASFLMCAFFK
101: LSPPQAALFR ALISARNHLG QFSRCQKLLV NGQVNSFIVL VLEILPAAQV KFYLVLREVR RSSYSFKRGK QSVAPYVQGH RQMNNFMMGA LCCVPVGPHG
201: PKSNTSGRDC SIDPSEPHWR TNSSYSPHLS RRWDCSSQSD ELSNRVHEVP ISGSSMSLHS NVRHIGSSDL NHHHSVSDGA LSYSESPSDY LQARRWTPCV
301: HRYDLGEFST PAGGARPEAS VFSRGSEGGF SAGNSIGSPF SPLESSRWAS TSKQPAFFPR HLPSRRSFMS KPIYPLMFQN PVSEADASGM AEASTSGSRM
401: PREDSGASPM WTERILSSEL KEGFRWSNAS SYDFRFDGDN VDIADTINVE NHRCPSTSRY QKCELCKRSL YQKSPWSSNR IVRSTDMPVA GILPCHHVFH
501: ADCLEETTPK SQIHDPPCPV CLKAVGKEQS TSISEPLHVA LRSACSSQGA GASTGAGTSG HSISHQIEND LRRSSSLATS QRRGSLSRNH SKKRFSFKGK
601: IGMDLLGAKM FRTVKELVRA ASFLMCAFFK
001: MGSLCCVAAK SDRSNSTSGD FSFGLHEPYW RTNTSFSPPS SRWDVHGLMD GISCYGSSTS SNANVLRSPD LSQALHWTPN DFESATRRDQ IVKQLPGTSR
101: NVGIGDSEPG RNSSSRRFFL SKPVHPILHP SDNVRDTASD SADACSWSSG TPSSIDSVDV PEPVLDWNNN STKAQQVAAS STFKCGLCNR YLSQKSPWGS
201: RSIVRNRDMP VTGVLSCQHV FHVECLDQST PKIQRNDPLC PICTKQEGEH FKSNNIVPRL KPLYEDGPSS RPWGCAQAGD CVESAVNVPP KNTMMMINRN
301: RIRKSLSLRG NSSKDFSRKM KRSNSVAMEN LANQVSLVHS RGKEKVSW
101: NVGIGDSEPG RNSSSRRFFL SKPVHPILHP SDNVRDTASD SADACSWSSG TPSSIDSVDV PEPVLDWNNN STKAQQVAAS STFKCGLCNR YLSQKSPWGS
201: RSIVRNRDMP VTGVLSCQHV FHVECLDQST PKIQRNDPLC PICTKQEGEH FKSNNIVPRL KPLYEDGPSS RPWGCAQAGD CVESAVNVPP KNTMMMINRN
301: RIRKSLSLRG NSSKDFSRKM KRSNSVAMEN LANQVSLVHS RGKEKVSW
Arabidopsis Description
Putative mandelonitrile lyase [Source:UniProtKB/TrEMBL;Acc:Q8GXX6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.