Factsheet for GSMUA_Achr6P08950_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P09630_001
GSMUA_Achr2P17520_001
GSMUA_Achr4P21110_001
GSMUA_Achr4P28510_001
GSMUA_Achr7P16760_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19680.1	GSMUA_Achr10P...	AT3G27960.1	21798944
AT1G19680.1	GSMUA_Achr2P09630_001	AT3G27960.1	21798944
AT1G75400.1	GSMUA_Achr2P17520_001	AT3G22960.1	21798944
AT1G75400.1	GSMUA_Achr4P21110_001	AT3G22960.1	21798944
AT1G75400.1	GSMUA_Achr4P28510_001	AT3G22960.1	21798944
AT1G75400.1	GSMUA_Achr7P16760_001	AT3G22960.1	21798944
AT1G75400.1	GSMUA_Achr11P...	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P24550_001	Banana	nucleus	51.31	50.7
GSMUA_Achr10P...	Banana	nucleus	52.49	48.04
VIT_03s0038g04400.t01	Wine grape	nucleus	45.13	41.76
VIT_18s0001g13060.t01	Wine grape	nucleus	41.81	39.73
KRH05863	Soybean	nucleus	39.91	38.71
KRH20799	Soybean	nucleus	40.14	38.41
Solyc10g054030.1.1	Tomato	nucleus	37.77	38.22
PGSC0003DMT400066093	Potato	nucleus	37.77	38.13
KRH15146	Soybean	nucleus	39.19	38.02
KRH27444	Soybean	nucleus, plastid	38.95	37.96
KRH51797	Soybean	nucleus	38.24	37.27
KRH51493	Soybean	nucleus	38.0	36.78
KRH60799	Soybean	nucleus, plastid	37.77	36.55
KRH61121	Soybean	plastid	38.24	36.34
PGSC0003DMT400089080	Potato	nucleus	36.34	34.23
Solyc01g109910.2.1	Tomato	nucleus	36.58	33.48
CDY13812	Canola	cytosol, nucleus, peroxisome	31.59	33.33
Bra031193.1-P	Field mustard	nucleus	31.59	32.28
VIT_04s0079g00570.t01	Wine grape	cytosol	9.5	32.26
CDY41965	Canola	nucleus	31.83	31.68
AT1G75400.1	Thale cress	plastid	34.2	31.65
CDX82036	Canola	nucleus	30.17	31.44
AT2G21500.2	Thale cress	nucleus	31.35	31.35
CDY47525	Canola	nucleus, plastid	34.44	31.32
AT4G39140.3	Thale cress	nucleus	31.83	31.24
CDY69665	Canola	nucleus, plastid	34.2	31.03
Bra011873.1-P	Field mustard	nucleus	31.83	30.95
PGSC0003DMT400028504	Potato	cytosol, plastid	8.08	30.91
CDY12123	Canola	nucleus	30.88	30.81
CDY39030	Canola	nucleus, plastid	15.44	30.37
CDY42611	Canola	nucleus	30.17	30.24
Bra015846.1-P	Field mustard	nucleus	34.68	29.49
CDX68130	Canola	nucleus, plastid	14.49	29.47
Bra003754.1-P	Field mustard	nucleus, plastid	14.49	29.47
AT1G19680.1	Thale cress	nucleus	30.88	29.28
CDY56767	Canola	cytosol, nucleus, peroxisome, plastid	27.79	29.25
VIT_04s0079g00560.t01	Wine grape	cytosol	10.69	29.03
Bra010702.1-P	Field mustard	nucleus	28.27	28.81
CDX90314	Canola	nucleus	28.27	28.74
CDX72716	Canola	nucleus	26.6	28.72
Bra033599.1-P	Field mustard	nucleus	26.6	28.21
Bra008196.1-P	Field mustard	cytosol	15.2	26.89
GSMUA_Achr3P01890_001	Banana	nucleus	15.91	12.86
GSMUA_Achr5P27760_001	Banana	nucleus	16.63	11.11

Protein Annotations

EnsemblPlants:GSMUA_Achr6P08950_001	EnsemblPlants:GSMUA_Achr6T08950_001	EnsemblPlantsGene:GSMUA_Achr6G08950_001	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR31150	PANTHER:PTHR31150:SF18	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002953E7A	UniProt:M0T5E4	MapMan:35.2	:

Description

zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G08950_001]

Coordinates

chr6:-:5951181..5955527

Molecular Weight (calculated)

46227.3 Da

IEP (calculated)

8.543

GRAVY (calculated)

-0.768

Length

421 amino acids

Sequence
(BLAST)

001: MGANCCVAVK DKHLPSPAQF DVSTYRTVRH SPTWSFRWDN RTHIEDVIDN AAQFCHQHSG NTGLEIKSES PTEAESPSDS GSPSNAFQLQ KQHISPSRTG
101: TAGKLKDVAA DDQFFGRNSS PKSKGSPKSS CLASTSDINL SISVPSTPSS SSFKADPSTS RSRSLPSDPT SSRKACRSPG YQLCRQISDS RIPSLQSRNE
201: NSSPEGRKSF VLSFCSNDLS TGGSHGGSSD GWSMCTFSEL VASSNRERLS FDSDNLNFFS SQLTESNPQQ TTQVFPDQQT CRVCSKQLTK HCVVAVLVCG
301: HLYHAECLEK MTSEIDQYDP TCPVCTHGEK AALKLFTKAE SKAKNKLSRI GIADSDAQAD ALCDHQNRAA EGPRMEASSN MKSSFGRPFL RRRFSFGRPS
401: WSASESEANR KKGFWERRRR E

Best Arabidopsis Sequence Match ( AT1G75400.1 )
(BLAST)

001: MGSVCCVAVK DRKVPPSGGP ASSSVHRNSA CSPQWSFRRD NRRRVADEIE GSPYYSPYVA SRGISMDKMS LGSERGTLSE GGTPPDGHLG TPASQKSATP
101: EMSTNSMVPP SSGSSLASSD LIEVKNLVDS PGIVPSAQSK PLFSTPSLPN PVSDLSSAHT RLLPPKSTPS RRARRSPGHQ LFRQVSDSQI LGLKSPINNY
201: SISEGRSSFV LSTCSNDFAT GSQYASSEGG WSMNTFSELV AYSQRDRWSF DSEHLGSGRR KLSGGSSRFS FSPSVVDQQV CGACSKLLTE RSSIATFELP
301: IAAVLACGHV YHAECLETMT TDIEKYDPAC PICTIGEKRV AKITRKALKA EAEAKAKQYK RCKNRVVDSY GESECDEFVF QKMGKREGKA LKLEASCSSK
401: SSSNKSFLKW HFASISSKWN KPSSKDSALK KGFWSRHRNN RSSSSIEGLN QTSPL

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7K7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.