Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400028504 | Potato | cytosol, plastid | 34.84 | 49.09 |
| VIT_03s0038g04400.t01 | Wine grape | nucleus | 56.13 | 19.12 |
| PGSC0003DMT400066093 | Potato | nucleus | 38.71 | 14.39 |
| Solyc10g054030.1.1 | Tomato | nucleus | 38.06 | 14.18 |
| Solyc01g109910.2.1 | Tomato | nucleus | 40.0 | 13.48 |
| PGSC0003DMT400089080 | Potato | nucleus | 38.71 | 13.42 |
| KRH51493 | Soybean | nucleus | 36.13 | 12.87 |
| KRH27444 | Soybean | nucleus, plastid | 34.84 | 12.5 |
| KRH60799 | Soybean | nucleus, plastid | 34.84 | 12.41 |
| CDX82036 | Canola | nucleus | 32.26 | 12.38 |
| CDY13812 | Canola | cytosol, nucleus, peroxisome | 31.61 | 12.28 |
| KRH20799 | Soybean | nucleus | 34.84 | 12.27 |
| Bra031193.1-P | Field mustard | nucleus | 31.61 | 11.89 |
| VIT_18s0001g13060.t01 | Wine grape | nucleus | 32.9 | 11.51 |
| AT2G21500.2 | Thale cress | nucleus | 30.97 | 11.4 |
| AT4G39140.3 | Thale cress | nucleus | 29.68 | 10.72 |
| GSMUA_Achr6P08950_001 | Banana | nucleus | 29.03 | 10.69 |
| Bra010702.1-P | Field mustard | nucleus | 28.39 | 10.65 |
| CDX90314 | Canola | nucleus | 28.39 | 10.63 |
| CDY12123 | Canola | nucleus | 28.39 | 10.43 |
| CDY42611 | Canola | nucleus | 27.74 | 10.24 |
| TraesCS3D01G183800.1 | Wheat | plastid | 27.74 | 10.05 |
| GSMUA_Achr4P24550_001 | Banana | nucleus | 27.1 | 9.86 |
| HORVU3Hr1G036310.2 | Barley | plastid | 27.1 | 9.79 |
| TraesCS3B01G208200.1 | Wheat | plastid | 27.1 | 9.79 |
| Bra011873.1-P | Field mustard | nucleus | 27.1 | 9.7 |
| CDY41965 | Canola | nucleus | 26.45 | 9.69 |
| EES00516 | Sorghum | cytosol | 27.1 | 9.68 |
| TraesCS3A01G176600.1 | Wheat | plastid | 26.45 | 9.56 |
| Os01t0261100-01 | Rice | cytosol | 26.45 | 9.51 |
| Zm00001d008306_P012 | Maize | cytosol | 26.45 | 9.26 |
| GSMUA_Achr10P... | Banana | nucleus | 27.1 | 9.13 |
| Zm00001d040317_P005 | Maize | cytosol | 25.16 | 8.52 |
| OQU86641 | Sorghum | nucleus | 23.23 | 8.41 |
| HORVU3Hr1G036290.3 | Barley | cytosol | 23.23 | 8.39 |
| TraesCS3D01G183700.1 | Wheat | cytosol | 22.58 | 8.2 |
| TraesCS3B01G208100.1 | Wheat | cytosol | 22.58 | 8.18 |
| TraesCS3A01G176900.1 | Wheat | cytosol | 22.58 | 8.18 |
| CDY56767 | Canola | cytosol, nucleus, peroxisome, plastid | 20.65 | 8.0 |
| CDX72716 | Canola | nucleus | 16.77 | 6.67 |
| VIT_11s0118g00330.t01 | Wine grape | nucleus | 9.03 | 5.69 |
| Bra033599.1-P | Field mustard | nucleus | 14.19 | 5.54 |
| VIT_08s0007g07610.t01 | Wine grape | nucleus | 10.32 | 4.4 |
| VIT_04s0079g00570.t01 | Wine grape | cytosol | 2.58 | 3.23 |
Protein Annotations
| ArrayExpress:VIT_04s0079g00560 | EMBL:AM484212 | EMBL:FN595753 | EnsemblPlants:VIT_04s0079g00560.t01 | EnsemblPlantsGene:VIT_04s0079g00560 | PANTHER:PTHR31150 |
| PANTHER:PTHR31150:SF2 | ProteinID:CAN64276 | ProteinID:CAN64276.1 | ProteinID:CCB51120 | ProteinID:CCB51120.1 | SEG:seg |
| UniParc:UPI0001522BD1 | UniProt:A5C6Q6 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr4:+:11210875..11211852
Molecular Weight (calculated)
16981.8 Da
IEP (calculated)
9.737
GRAVY (calculated)
-0.614
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSACCVVTR DRTITNGPSR EVLQHGNVQY SPSWSFRWDN RGHVASEIDT FAIWFVDGPN KNRGLENKSK TTYASDGRSP LENFQTLTWQ KSPVSKRIAG
101: NLTTPTSDQS ISRNISMEMK ESTRSLGVSD LSPAKLSPIF PSPSPSSLST SPLSS
101: NLTTPTSDQS ISRNISMEMK ESTRSLGVSD LSPAKLSPIF PSPSPSSLST SPLSS
001: MGNACCVAAR DKMVVPNSSA GENLQRSNIR HSPSWSFRWD NRGRVAGEET SLSWLSDGIS RNDGSEIKFE SAFVSSEGSP LDSFRTQTLQ KSPASDLSFP
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI
Arabidopsis Description
RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9T023]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.