Factsheet for HORVU3Hr1G036310.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
extracellular 1
plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G027080.4
HORVU2Hr1G050140.1
HORVU6Hr1G062870.1
HORVU6Hr1G069310.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19680.1	HORVU6Hr1G069310.1	AT3G27960.1	21798944
AT1G75400.1	HORVU2Hr1G050140.1	AT3G22960.1	21798944
AT1G75400.1	HORVU0Hr1G027080.4	AT3G48150.1	21798944
AT1G75400.1	HORVU6Hr1G062870.1	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G183800.1	Wheat	plastid	97.9	98.13
TraesCS3B01G208200.1	Wheat	plastid	97.9	97.9
TraesCS3A01G176600.1	Wheat	plastid	97.9	97.9
Os01t0261100-01	Rice	cytosol	84.85	84.45
EES00516	Sorghum	cytosol	83.22	82.26
Zm00001d008306_P012	Maize	cytosol	79.02	76.52
Zm00001d040317_P005	Maize	cytosol	74.59	69.87
HORVU3Hr1G036290.3	Barley	cytosol	69.7	69.7
GSMUA_Achr4P24550_001	Banana	nucleus	50.12	50.47
VIT_03s0038g04400.t01	Wine grape	nucleus	43.12	40.66
VIT_18s0001g13060.t01	Wine grape	nucleus	41.03	39.73
KRH51797	Soybean	nucleus	38.46	38.19
KRH05863	Soybean	nucleus	38.46	38.02
KRH61121	Soybean	plastid	38.69	37.47
KRH15146	Soybean	nucleus	37.76	37.33
PGSC0003DMT400066093	Potato	nucleus	36.13	37.17
Solyc10g054030.1.1	Tomato	nucleus	35.66	36.78
VIT_04s0079g00570.t01	Wine grape	cytosol	10.49	36.29
KRH20799	Soybean	nucleus	37.06	36.14
KRH27444	Soybean	nucleus, plastid	35.43	35.19
Solyc01g109910.2.1	Tomato	nucleus	37.53	35.0
KRH60799	Soybean	nucleus, plastid	35.2	34.71
KRH51493	Soybean	nucleus	35.2	34.71
PGSC0003DMT400028504	Potato	cytosol, plastid	8.86	34.55
PGSC0003DMT400089080	Potato	nucleus	35.2	33.78
AT1G75400.1	Thale cress	plastid	35.66	33.63
CDY13812	Canola	cytosol, nucleus, peroxisome	30.54	32.83
CDY39030	Canola	nucleus, plastid	16.08	32.24
CDX68130	Canola	nucleus, plastid	15.38	31.88
Bra003754.1-P	Field mustard	nucleus, plastid	15.38	31.88
AT2G21500.2	Thale cress	nucleus	31.24	31.83
Bra031193.1-P	Field mustard	nucleus	30.3	31.55
CDY47525	Canola	nucleus, plastid	34.03	31.53
CDY69665	Canola	nucleus, plastid	33.8	31.25
CDX82036	Canola	nucleus	28.67	30.45
AT4G39140.3	Thale cress	nucleus	29.84	29.84
AT1G19680.1	Thale cress	nucleus	30.77	29.73
Bra015846.1-P	Field mustard	nucleus	34.27	29.7
CDY41965	Canola	nucleus	28.9	29.31
Bra008196.1-P	Field mustard	cytosol	16.08	28.99
CDY42611	Canola	nucleus	28.21	28.81
Bra011873.1-P	Field mustard	nucleus	28.67	28.41
CDY12123	Canola	nucleus	27.74	28.2
CDX90314	Canola	nucleus	27.04	28.02
Bra010702.1-P	Field mustard	nucleus	26.81	27.84
VIT_04s0079g00560.t01	Wine grape	cytosol	9.79	27.1
CDY56767	Canola	cytosol, nucleus, peroxisome, plastid	25.17	27.0
Bra033599.1-P	Field mustard	nucleus	24.48	26.45
CDX72716	Canola	nucleus	24.01	26.41
HORVU6Hr1G075350.1	Barley	nucleus	19.11	17.75

Protein Annotations

EnsemblPlants:HORVU3Hr1G036310.2	EnsemblPlantsGene:HORVU3Hr1G036310	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR31150
PANTHER:PTHR31150:SF18	PFAM:PF00097	PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI0002966CE1	UniProt:M0YFX2	MapMan:35.2	:	:	:

Description

Predicted protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:M0YFX2]

Coordinates

chrchr3H:+:205145726..205150206

Molecular Weight (calculated)

47296.7 Da

IEP (calculated)

9.818

GRAVY (calculated)

-0.667

Length

429 amino acids

Sequence
(BLAST)

001: MGANCCIAAK QRPQPCIIPV EVSAYRNVRH SPSWSFRWDN RTHIEDIMEI PTFLSNHSSG SIRPETKSGS IAPTEGFSNG GSPSDLFHKV KWQKSEKKME
101: TSKVAQSDPR ADRPTASNSS PEAKLCRKSL DMVSVASDTK ASASVSSTPP VVSRADPSSS RGHSLGMDTD SMRKARRSPG YQLYRQVSDS KIPSLRSLNE
201: SNSPEGRPSS SMLSVCSNDL SVAGSHGESS DGWSMRTFSE MVASSQRERW SIDSELLGSI SSKMTRSNAS NRTTVSPDQE VCKLCLKLLK ERSAWNAQDL
301: GVVAVLLCGH VYHADCLDSL TAEAEKYDPP CPVCTHGEQC TVKLFGKLES KIKNKIPTNV ILDGDLDGSS KHQKKSKRVP RLGTSISMKD SFSRPFLRRH
401: FSIGSRPPRL VSESESTRKK GFWARHWRE

Best Arabidopsis Sequence Match ( AT1G19680.1 )
(BLAST)

001: MGSVCCVAAK DRNVPSGAID NSVCSPSWSF RRDNRRRVAD EIKDSSNHNV GSRGIDIDKL SLGLERGPPS SETGGLATLG SQKSADSEMG TASMVTAPLA
101: GTSLAIRSPS DVSLASPVRV EVKNIVDSSD IVSSVLPNPS SSTSVSDLPS AHTHSLPPRS TPSRRARGSP GQQLFRQVSD SQTLGLKSPN NYSTSEGRSS
201: FVLSTCSNDT ATGSHFASSE GGWSINAFCE LVAQSQRERW SFDNEHLGSG RRRLSGCSSS RFSCSPSVDQ QTCGRCSKLL TERSPVARFD LPIPAVLACG
301: HVYHAACLET MTNETEKYDP TCPICTETQV TKLSRKALKA EAELKATSYK RCKNRVVDSY VRSECEDLMF QNLGKREGKG LKMDPSSNTK GSTSKSFMKW
401: HFGSVSTKWS KARDSTSKKS FWSRHSNKRL SHSFSSVEGL NQAT

Arabidopsis Description

At1g19680 [Source:UniProtKB/TrEMBL;Acc:Q9FXG6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.