Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G284300.1 | Wheat | nucleus | 94.37 | 94.58 |
| TraesCS6B01G333400.1 | Wheat | nucleus | 94.16 | 94.36 |
| TraesCS6A01G305100.2 | Wheat | nucleus | 92.42 | 92.42 |
| Os03t0326300-01 | Rice | nucleus | 77.71 | 80.67 |
| EER92330 | Sorghum | nucleus | 77.27 | 77.27 |
| Zm00001d047558_P001 | Maize | nucleus | 75.54 | 76.03 |
| Zm00001d028989_P002 | Maize | endoplasmic reticulum, plasma membrane | 49.57 | 49.78 |
| VIT_08s0007g07610.t01 | Wine grape | nucleus | 31.82 | 40.38 |
| GSMUA_Achr5P27760_001 | Banana | nucleus | 40.26 | 29.52 |
| HORVU3Hr1G036310.2 | Barley | plastid | 17.75 | 19.11 |
| HORVU3Hr1G036290.3 | Barley | cytosol | 16.45 | 17.72 |
Protein Annotations
| EMBL:AK362056 | EMBL:AK373802 | EMBL:AK374706 | EnsemblPlants:HORVU6Hr1G075350.1 | EnsemblPlantsGene:HORVU6Hr1G075350 | Gene3D:3.30.40.10 |
| InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR31150 | PANTHER:PTHR31150:SF9 |
| PFscan:PS50089 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000200604B | UniProt:F2DDT9 |
| MapMan:35.2 | : | : | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DDT9]
Coordinates
chrchr6H:-:519372583..519377307
Molecular Weight (calculated)
50427.0 Da
IEP (calculated)
9.267
GRAVY (calculated)
-0.783
Length
462 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPTEPRWRM NSSFSPPSRG WDCMYSSDGL PHRTPDAPHD HPPYVSSLSS HSKGSRSAFG SDQYLNHHHS VSDGALSYFG SPVDSLQAPR WTPSLQRFDL
101: GEFSTPAGGP KPESSDLQSS ERHLTAVSSF SSASPFSETS QLASSGKRPA SHLPRNHLGR RSFMSTPVYP LVFRNPVSEA EASGVAEASN AGRTTPSDDS
201: LASPVWRRSL ASPELKFHDT LSELRKMEAS PEPNTSSRRE GFRWSSASSY DFGYDGDAID ISDHISIDSQ RSPTSSASFL KCGLCERFLR QKSPWSSNRI
301: VRNTNMPVAA VLPCRHVFHA DCLEESTPKS EAHEPPCPLC TRAPDSEGCV SFSEPLHVAL RSARRNHGIR FSSGDAGGSS SSANPSRTDH ALKRNQSALA
401: PARSGSLFRN RFKKQFPFKG RLGKDLFGGR VFRKAGSSSS SGGQKDDRRQ PPAANKPDQS ME
101: GEFSTPAGGP KPESSDLQSS ERHLTAVSSF SSASPFSETS QLASSGKRPA SHLPRNHLGR RSFMSTPVYP LVFRNPVSEA EASGVAEASN AGRTTPSDDS
201: LASPVWRRSL ASPELKFHDT LSELRKMEAS PEPNTSSRRE GFRWSSASSY DFGYDGDAID ISDHISIDSQ RSPTSSASFL KCGLCERFLR QKSPWSSNRI
301: VRNTNMPVAA VLPCRHVFHA DCLEESTPKS EAHEPPCPLC TRAPDSEGCV SFSEPLHVAL RSARRNHGIR FSSGDAGGSS SSANPSRTDH ALKRNQSALA
401: PARSGSLFRN RFKKQFPFKG RLGKDLFGGR VFRKAGSSSS SGGQKDDRRQ PPAANKPDQS ME
001: MGSLCCVAAK SDRSNSTSGD FSFGLHEPYW RTNTSFSPPS SRWDVHGLMD GISCYGSSTS SNANVLRSPD LSQALHWTPN DFESATRRDQ IVKQLPGTSR
101: NVGIGDSEPG RNSSSRRFFL SKPVHPILHP SDNVRDTASD SADACSWSSG TPSSIDSVDV PEPVLDWNNN STKAQQVAAS STFKCGLCNR YLSQKSPWGS
201: RSIVRNRDMP VTGVLSCQHV FHVECLDQST PKIQRNDPLC PICTKQEGEH FKSNNIVPRL KPLYEDGPSS RPWGCAQAGD CVESAVNVPP KNTMMMINRN
301: RIRKSLSLRG NSSKDFSRKM KRSNSVAMEN LANQVSLVHS RGKEKVSW
101: NVGIGDSEPG RNSSSRRFFL SKPVHPILHP SDNVRDTASD SADACSWSSG TPSSIDSVDV PEPVLDWNNN STKAQQVAAS STFKCGLCNR YLSQKSPWGS
201: RSIVRNRDMP VTGVLSCQHV FHVECLDQST PKIQRNDPLC PICTKQEGEH FKSNNIVPRL KPLYEDGPSS RPWGCAQAGD CVESAVNVPP KNTMMMINRN
301: RIRKSLSLRG NSSKDFSRKM KRSNSVAMEN LANQVSLVHS RGKEKVSW
Arabidopsis Description
Putative mandelonitrile lyase [Source:UniProtKB/TrEMBL;Acc:Q8GXX6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.