Factsheet for HORVU3Hr1G036290.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G027080.4
HORVU2Hr1G050140.1
HORVU6Hr1G062870.1
HORVU6Hr1G069310.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19680.1	HORVU6Hr1G069310.1	AT3G27960.1	21798944
AT1G75400.1	HORVU2Hr1G050140.1	AT3G22960.1	21798944
AT1G75400.1	HORVU0Hr1G027080.4	AT3G48150.1	21798944
AT1G75400.1	HORVU6Hr1G062870.1	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G183700.1	Wheat	cytosol	94.87	95.32
TraesCS3B01G208100.1	Wheat	cytosol	94.87	95.09
TraesCS3A01G176900.1	Wheat	cytosol	94.87	95.09
HORVU3Hr1G036310.2	Barley	plastid	69.7	69.7
OQU86641	Sorghum	nucleus	64.1	64.25
GSMUA_Achr4P24550_001	Banana	nucleus	45.92	46.24
VIT_18s0001g13060.t01	Wine grape	nucleus	40.09	38.83
KRH05863	Soybean	nucleus	39.16	38.71
KRH15146	Soybean	nucleus	38.69	38.25
VIT_03s0038g04400.t01	Wine grape	nucleus	40.33	38.02
KRH51797	Soybean	nucleus	37.76	37.5
KRH51493	Soybean	nucleus	38.0	37.47
KRH60799	Soybean	nucleus, plastid	37.76	37.24
KRH61121	Soybean	plastid	38.0	36.79
KRH20799	Soybean	nucleus	37.3	36.36
PGSC0003DMT400066093	Potato	nucleus	34.97	35.97
KRH27444	Soybean	nucleus, plastid	35.9	35.65
Solyc10g054030.1.1	Tomato	nucleus	34.5	35.58
Solyc01g109910.2.1	Tomato	nucleus	38.0	35.43
VIT_04s0079g00570.t01	Wine grape	cytosol	10.02	34.68
PGSC0003DMT400089080	Potato	nucleus	36.13	34.68
PGSC0003DMT400028504	Potato	cytosol, plastid	8.39	32.73
AT1G75400.1	Thale cress	plastid	34.27	32.31
CDY39030	Canola	nucleus, plastid	16.08	32.24
CDY47525	Canola	nucleus, plastid	34.5	31.97
CDY69665	Canola	nucleus, plastid	33.8	31.25
Bra003754.1-P	Field mustard	nucleus, plastid	14.92	30.92
CDX68130	Canola	nucleus, plastid	14.92	30.92
CDY13812	Canola	cytosol, nucleus, peroxisome	28.21	30.33
Bra015846.1-P	Field mustard	nucleus	34.27	29.7
Bra031193.1-P	Field mustard	nucleus	28.21	29.37
AT2G21500.2	Thale cress	nucleus	28.67	29.22
AT4G39140.3	Thale cress	nucleus	29.14	29.14
CDX82036	Canola	nucleus	27.27	28.96
AT1G19680.1	Thale cress	nucleus	29.84	28.83
CDY41965	Canola	nucleus	27.04	27.42
CDY42611	Canola	nucleus	26.81	27.38
Bra011873.1-P	Field mustard	nucleus	27.51	27.25
CDY12123	Canola	nucleus	26.81	27.25
Bra008196.1-P	Field mustard	cytosol	14.92	26.89
Bra010702.1-P	Field mustard	nucleus	25.41	26.39
CDX90314	Canola	nucleus	25.41	26.33
CDY56767	Canola	cytosol, nucleus, peroxisome, plastid	24.48	26.25
Bra033599.1-P	Field mustard	nucleus	24.24	26.2
CDX72716	Canola	nucleus	23.54	25.9
VIT_04s0079g00560.t01	Wine grape	cytosol	8.39	23.23
HORVU6Hr1G075350.1	Barley	nucleus	17.72	16.45

Protein Annotations

EnsemblPlants:HORVU3Hr1G036290.3	EnsemblPlantsGene:HORVU3Hr1G036290	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR31150	PANTHER:PTHR31150:SF18	PFscan:PS50089	SEG:seg	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI000B4688EF	UniProt:A0A287KRV4	MapMan:35.2	:	:

Description

No Description!

Coordinates

chrchr3H:-:205057294..205061014

Molecular Weight (calculated)

47032.0 Da

IEP (calculated)

10.203

GRAVY (calculated)

-0.759

Length

429 amino acids

Sequence
(BLAST)

001: MGANCCIAAK QRPEPSVASV EVLAYRTRHS PSWSFRWDNR THIEDIMENA ALFSNHSSGN VRPELKSGSI APTEGHPNED NLSDVLRGVK WQKPDKKMEA
101: SKHSKAGSQA VQSTASNSLP EVAKSCKSSH MVNVASDIKT SKSLPSTPPI VSRSDPSSSR CHSLHVDSFS MRKARRSPGH QLCRQISDSK IPSLKSFSES
201: SYAGGRPSSS MLSTCSNDPF GGGSQHGGSS DGWSTRTFSD LVASSQRERW SVESELFGSI SSKIARSNDS HATVLSPDEG ICKLCSKLLK ERSTWSSHDL
301: GVVAVLFCGH AYHANCLDST TSESEKYDPP CPVCTHGEKG AAKLFGKLDS KSKSRKSKNV MSDTDIDRSS KHKKRSMREP RLGTSSSMKD SFRRPFLKRH
401: FSIGSRPPRS LLGSEPTGKK SFWARHWRE

Best Arabidopsis Sequence Match ( AT1G19680.1 )
(BLAST)

001: MGSVCCVAAK DRNVPSGAID NSVCSPSWSF RRDNRRRVAD EIKDSSNHNV GSRGIDIDKL SLGLERGPPS SETGGLATLG SQKSADSEMG TASMVTAPLA
101: GTSLAIRSPS DVSLASPVRV EVKNIVDSSD IVSSVLPNPS SSTSVSDLPS AHTHSLPPRS TPSRRARGSP GQQLFRQVSD SQTLGLKSPN NYSTSEGRSS
201: FVLSTCSNDT ATGSHFASSE GGWSINAFCE LVAQSQRERW SFDNEHLGSG RRRLSGCSSS RFSCSPSVDQ QTCGRCSKLL TERSPVARFD LPIPAVLACG
301: HVYHAACLET MTNETEKYDP TCPICTETQV TKLSRKALKA EAELKATSYK RCKNRVVDSY VRSECEDLMF QNLGKREGKG LKMDPSSNTK GSTSKSFMKW
401: HFGSVSTKWS KARDSTSKKS FWSRHSNKRL SHSFSSVEGL NQAT

Arabidopsis Description

At1g19680 [Source:UniProtKB/TrEMBL;Acc:Q9FXG6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.