Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400028504 | Potato | cytosol, plastid | 25.24 | 95.45 |
| PGSC0003DMT400066093 | Potato | nucleus | 95.19 | 94.96 |
| Solyc01g109910.2.1 | Tomato | nucleus | 71.15 | 64.35 |
| VIT_03s0038g04400.t01 | Wine grape | nucleus | 59.38 | 54.29 |
| KRH60799 | Soybean | nucleus, plastid | 54.33 | 51.95 |
| KRH51493 | Soybean | nucleus | 53.61 | 51.26 |
| KRH20799 | Soybean | nucleus | 50.72 | 47.95 |
| KRH27444 | Soybean | nucleus, plastid | 49.28 | 47.45 |
| AT2G21500.2 | Thale cress | nucleus | 43.51 | 42.99 |
| CDY13812 | Canola | cytosol, nucleus, peroxisome | 39.9 | 41.6 |
| AT4G39140.3 | Thale cress | nucleus | 42.31 | 41.03 |
| Bra031193.1-P | Field mustard | nucleus | 39.9 | 40.29 |
| CDY12123 | Canola | nucleus | 39.9 | 39.34 |
| CDY41965 | Canola | nucleus | 39.9 | 39.24 |
| CDY42611 | Canola | nucleus | 38.94 | 38.57 |
| Bra011873.1-P | Field mustard | nucleus | 39.9 | 38.34 |
| VIT_04s0079g00560.t01 | Wine grape | cytosol | 14.18 | 38.06 |
| GSMUA_Achr6P08950_001 | Banana | nucleus | 38.22 | 37.77 |
| CDX82036 | Canola | nucleus | 36.06 | 37.13 |
| Bra010702.1-P | Field mustard | nucleus | 35.58 | 35.84 |
| CDX90314 | Canola | nucleus | 35.58 | 35.75 |
| Os01t0261100-01 | Rice | cytosol | 37.02 | 35.73 |
| EES00516 | Sorghum | cytosol | 37.26 | 35.71 |
| HORVU3Hr1G036310.2 | Barley | plastid | 36.78 | 35.66 |
| TraesCS3A01G176900.1 | Wheat | cytosol | 36.54 | 35.51 |
| CDY56767 | Canola | cytosol, nucleus, peroxisome, plastid | 33.89 | 35.25 |
| TraesCS3A01G176600.1 | Wheat | plastid | 36.3 | 35.2 |
| TraesCS3D01G183700.1 | Wheat | cytosol | 36.06 | 35.13 |
| TraesCS3B01G208100.1 | Wheat | cytosol | 36.06 | 35.05 |
| TraesCS3D01G183800.1 | Wheat | plastid | 36.06 | 35.05 |
| TraesCS3B01G208200.1 | Wheat | plastid | 36.06 | 34.97 |
| HORVU3Hr1G036290.3 | Barley | cytosol | 35.58 | 34.5 |
| VIT_04s0079g00570.t01 | Wine grape | cytosol | 10.1 | 33.87 |
| Zm00001d008306_P012 | Maize | cytosol | 36.06 | 33.86 |
| GSMUA_Achr4P24550_001 | Banana | nucleus | 33.65 | 32.86 |
| OQU86641 | Sorghum | nucleus | 33.65 | 32.71 |
| CDX72716 | Canola | nucleus | 30.29 | 32.31 |
| Bra033599.1-P | Field mustard | nucleus | 28.85 | 30.23 |
| Zm00001d040317_P005 | Maize | cytosol | 31.49 | 28.6 |
| GSMUA_Achr10P... | Banana | nucleus | 29.81 | 26.96 |
| Solyc12g009830.1.1 | Tomato | nucleus | 10.82 | 20.27 |
| Solyc05g007820.2.1 | Tomato | nucleus | 12.02 | 19.68 |
| Solyc07g007610.2.1 | Tomato | nucleus | 10.34 | 18.14 |
Protein Annotations
| EnsemblPlants:Solyc10g054030.1.1 | EnsemblPlantsGene:Solyc10g054030.1 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR31150 | PANTHER:PTHR31150:SF2 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000276A891 | UniProt:K4D101 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr10:+:54518186..54523827
Molecular Weight (calculated)
45299.6 Da
IEP (calculated)
9.366
GRAVY (calculated)
-0.602
Length
416 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSACCVAAR DRAVLDGSSC ENFQRNVRQS PTWSFRWDNR GRVAGEETPV NWSSDGIGGN DGIEFKSGTV GTVYASEEGS PLDSFRSLAW QKSPVSERNN
101: RNFSLPLLDP LAERNSTEVK DFAGSTALSF RSPIKLSPSA PSVSSLSASP LSSRGQLPPA SFTPCLPHHS SAHQLGQQVS DGRVPGLKSP TFSISEESSS
201: FVLLPGWSND STRGSHGGSS DGWSAPGFAD LANPRRDRWS FDSESFGFHR ERATSRGSGS SSFDLQTCGI CAKLLNELAV AVLVCGHVFH AECLENMTSE
301: INRYDPACPV CTFGEKQALK IYEKAKAKIE LKARKRLRNR IVDSDISGNV DLLERQKSSA HEGGCPRMSS SSSMKSPSKR PFLRHYFSFG SKGSRSYSEG
401: PSTRRRGFSW TRSNKK
101: RNFSLPLLDP LAERNSTEVK DFAGSTALSF RSPIKLSPSA PSVSSLSASP LSSRGQLPPA SFTPCLPHHS SAHQLGQQVS DGRVPGLKSP TFSISEESSS
201: FVLLPGWSND STRGSHGGSS DGWSAPGFAD LANPRRDRWS FDSESFGFHR ERATSRGSGS SSFDLQTCGI CAKLLNELAV AVLVCGHVFH AECLENMTSE
301: INRYDPACPV CTFGEKQALK IYEKAKAKIE LKARKRLRNR IVDSDISGNV DLLERQKSSA HEGGCPRMSS SSSMKSPSKR PFLRHYFSFG SKGSRSYSEG
401: PSTRRRGFSW TRSNKK
001: MGNACCVAAR DKMVVPNSSA GENLQRSNIR HSPSWSFRWD NRGRVAGEET SLSWLSDGIS RNDGSEIKFE SAFVSSEGSP LDSFRTQTLQ KSPASDLSFP
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI
Arabidopsis Description
RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9T023]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.