Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400020268 | Potato | nucleus | 90.99 | 89.78 |
| Solyc07g007610.2.1 | Tomato | nucleus | 36.94 | 34.6 |
| KRH20198 | Soybean | nucleus | 20.27 | 30.0 |
| KRH03610 | Soybean | plastid | 16.22 | 29.51 |
| VIT_11s0118g00330.t01 | Wine grape | nucleus | 30.63 | 27.64 |
| Solyc05g007820.2.1 | Tomato | nucleus | 15.32 | 13.39 |
| Solyc10g054030.1.1 | Tomato | nucleus | 20.27 | 10.82 |
| Solyc01g109910.2.1 | Tomato | nucleus | 21.17 | 10.22 |
Protein Annotations
| EnsemblPlants:Solyc12g009830.1.1 | EnsemblPlantsGene:Solyc12g009830.1 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR31150 | PANTHER:PTHR31150:SF6 | PFscan:PS50089 | SEG:seg | SMART:SM00184 |
| SUPFAM:SSF57850 | UniParc:UPI0002769B36 | UniProt:K4DC71 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr12:-:3022114..3026459
Molecular Weight (calculated)
24550.7 Da
IEP (calculated)
8.486
GRAVY (calculated)
-0.771
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKRKRRADL NKTHSLTDQL PPPGMDALSR QTSHQVDVYA TKSFSSIMDI IDDSSKATQC QQPSIVHRRN IDQAMCSKNP HHYYGLHYTR RRSSNNAEAS
101: TSRGGTTSFY DELMSAKSAS KCNSDSGHDT ESKPQKPESV GVAPSLLATN ATSSNVTKQF CGLCQKPLRK KHYMLDSNIP SYEPSVVAVL VCGHLYHADC
201: LEERTHHDNA TDPPCPICRG IN
101: TSRGGTTSFY DELMSAKSAS KCNSDSGHDT ESKPQKPESV GVAPSLLATN ATSSNVTKQF CGLCQKPLRK KHYMLDSNIP SYEPSVVAVL VCGHLYHADC
201: LEERTHHDNA TDPPCPICRG IN
001: MGSVCCVAVK DRKVPPSGGP ASSSVHRNSA CSPQWSFRRD NRRRVADEIE GSPYYSPYVA SRGISMDKMS LGSERGTLSE GGTPPDGHLG TPASQKSATP
101: EMSTNSMVPP SSGSSLASSD LIEVKNLVDS PGIVPSAQSK PLFSTPSLPN PVSDLSSAHT RLLPPKSTPS RRARRSPGHQ LFRQVSDSQI LGLKSPINNY
201: SISEGRSSFV LSTCSNDFAT GSQYASSEGG WSMNTFSELV AYSQRDRWSF DSEHLGSGRR KLSGGSSRFS FSPSVVDQQV CGACSKLLTE RSSIATFELP
301: IAAVLACGHV YHAECLETMT TDIEKYDPAC PICTIGEKRV AKITRKALKA EAEAKAKQYK RCKNRVVDSY GESECDEFVF QKMGKREGKA LKLEASCSSK
401: SSSNKSFLKW HFASISSKWN KPSSKDSALK KGFWSRHRNN RSSSSIEGLN QTSPL
101: EMSTNSMVPP SSGSSLASSD LIEVKNLVDS PGIVPSAQSK PLFSTPSLPN PVSDLSSAHT RLLPPKSTPS RRARRSPGHQ LFRQVSDSQI LGLKSPINNY
201: SISEGRSSFV LSTCSNDFAT GSQYASSEGG WSMNTFSELV AYSQRDRWSF DSEHLGSGRR KLSGGSSRFS FSPSVVDQQV CGACSKLLTE RSSIATFELP
301: IAAVLACGHV YHAECLETMT TDIEKYDPAC PICTIGEKRV AKITRKALKA EAEAKAKQYK RCKNRVVDSY GESECDEFVF QKMGKREGKA LKLEASCSSK
401: SSSNKSFLKW HFASISSKWN KPSSKDSALK KGFWSRHRNN RSSSSIEGLN QTSPL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7K7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.