Factsheet for Solyc01g109910.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400089080	Potato	nucleus	86.96	89.49
Solyc10g054030.1.1	Tomato	nucleus	64.35	71.15
VIT_03s0038g04400.t01	Wine grape	nucleus	59.57	60.22
KRH51493	Soybean	nucleus	51.52	54.48
KRH60799	Soybean	nucleus, plastid	51.3	54.25
KRH27444	Soybean	nucleus, plastid	49.35	52.55
KRH20799	Soybean	nucleus	49.78	52.05
AT2G21500.2	Thale cress	nucleus	42.39	46.32
CDY13812	Canola	cytosol, nucleus, peroxisome	40.0	46.12
AT4G39140.3	Thale cress	nucleus	42.61	45.69
CDY42611	Canola	nucleus	41.09	45.0
Bra031193.1-P	Field mustard	nucleus	40.22	44.9
CDY41965	Canola	nucleus	40.22	43.74
CDY12123	Canola	nucleus	39.57	43.13
Bra011873.1-P	Field mustard	nucleus	40.43	42.96
VIT_04s0079g00570.t01	Wine grape	cytosol	11.52	42.74
CDX82036	Canola	nucleus	37.17	42.33
CDY56767	Canola	cytosol, nucleus, peroxisome, plastid	35.43	40.75
VIT_04s0079g00560.t01	Wine grape	cytosol	13.48	40.0
Bra010702.1-P	Field mustard	nucleus	35.65	39.71
CDX90314	Canola	nucleus	35.65	39.61
TraesCS3A01G176900.1	Wheat	cytosol	35.87	38.55
TraesCS3B01G208100.1	Wheat	cytosol	35.65	38.32
Os01t0261100-01	Rice	cytosol	35.87	38.28
CDX72716	Canola	nucleus	32.39	38.21
TraesCS3D01G183700.1	Wheat	cytosol	35.43	38.17
HORVU3Hr1G036290.3	Barley	cytosol	35.43	38.0
HORVU3Hr1G036310.2	Barley	plastid	35.0	37.53
EES00516	Sorghum	cytosol	35.22	37.33
TraesCS3D01G183800.1	Wheat	plastid	34.35	36.92
TraesCS3A01G176600.1	Wheat	plastid	34.35	36.83
TraesCS3B01G208200.1	Wheat	plastid	34.35	36.83
GSMUA_Achr6P08950_001	Banana	nucleus	33.48	36.58
Zm00001d008306_P012	Maize	cytosol	34.78	36.12
OQU86641	Sorghum	nucleus	33.48	35.98
GSMUA_Achr4P24550_001	Banana	nucleus	33.04	35.68
Bra033599.1-P	Field mustard	nucleus	29.78	34.51
Zm00001d040317_P005	Maize	cytosol	30.0	30.13
GSMUA_Achr10P...	Banana	nucleus	26.74	26.74
Solyc05g007820.2.1	Tomato	nucleus	13.04	23.62
Solyc12g009830.1.1	Tomato	nucleus	10.22	21.17
Solyc07g007610.2.1	Tomato	nucleus	10.0	19.41

Protein Annotations

EnsemblPlants:Solyc01g109910.2.1	EnsemblPlantsGene:Solyc01g109910.2	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR31150	PANTHER:PTHR31150:SF2	PFAM:PF13639	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002768BB0	UniProt:K4B3K4	MapMan:35.2	:

Description

No Description!

Coordinates

chr1:+:96753455..96758082

Molecular Weight (calculated)

50141.5 Da

IEP (calculated)

9.881

GRAVY (calculated)

-0.548

Length

460 amino acids

Sequence
(BLAST)

001: MGSACCVAAK DRAVINGSTG ETLQSNVRYS PSWSFRWDNR GRVAGEETSV NWSSDRVGGN DRLEFKSGTT VETLYASEEG SPLDSFRSLA LQKSPASDCN
101: TGNSMLPLSD TSVVRNSTEV KESFESSAVP CPSPLKLSSS DLSVSSLSAS PLSTKSQLLP ANSTPLPQYS SGHQLGRRVS DSHIAGIKSP TFSISEESSS
201: FMLPGWSNES TRGSNGGSSD GWSVPAFSDL LANPRRDRWS FDSESMGFHR DKMSRASGRS SGSPSIDLQT CGICTKLLTE RSSWSSNEIA VVSVLICGHV
301: FHADCLESMT PEFNKYDPAC PVCTFGEKQA LKMSEKALKS QMDLKARKRF RNRVVDSDFS GNLALFDRQK SGGHGGRRLK MSSSSSSMKI SSGKPFLLRH
401: FSFGSKGSKS FSESPSTRKK GFFWTRSSKE RHRSALSPWK DSKRGIIASG SCWQIWFPRI

Best Arabidopsis Sequence Match ( AT4G39140.1 )
(BLAST)

001: MGNACCVAAR DKMVVPNSSA GENLQRSNIR HSPSWSFRWD NRGRVAGEET SLSWLSDGIS RNDGSEIKFE SAFVSSEGSP LDSFRTQTLQ KSPASDLSFP
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI

Arabidopsis Description

RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9T023]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.