Factsheet for TraesCS3D01G183800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G240200.1
TraesCS2B01G257800.1
TraesCS2D01G237900.1
TraesCS6A01G251400.1
TraesCS6A01G274500.1
TraesCS6B01G273900.1
TraesCS6B01G302000.1
TraesCS6D01G233200.1
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19680.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT1G19680.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT1G19680.1	TraesCS6D01G254800.1	AT3G27960.1	21798944
AT1G75400.1	TraesCS2A01G240200.1	AT3G22960.1	21798944
AT1G75400.1	TraesCS2B01G257800.1	AT3G22960.1	21798944
AT1G75400.1	TraesCS2D01G237900.1	AT3G22960.1	21798944
AT1G75400.1	TraesCS6A01G251400.1	AT3G48150.1	21798944
AT1G75400.1	TraesCS6B01G273900.1	AT3G48150.1	21798944
AT1G75400.1	TraesCS6D01G233200.1	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G036310.2	Barley	plastid	98.13	97.9
TraesCS3B01G208200.1	Wheat	plastid	97.9	97.67
TraesCS3A01G176600.1	Wheat	plastid	97.9	97.67
Os01t0261100-01	Rice	cytosol	84.35	83.76
EES00516	Sorghum	cytosol	82.71	81.57
Zm00001d008306_P012	Maize	cytosol	78.27	75.62
TraesCS3D01G183700.1	Wheat	cytosol	70.09	70.26
Zm00001d040317_P005	Maize	cytosol	74.3	69.43
GSMUA_Achr4P24550_001	Banana	nucleus	49.3	49.53
VIT_03s0038g04400.t01	Wine grape	nucleus	43.22	40.66
VIT_18s0001g13060.t01	Wine grape	nucleus	40.65	39.28
KRH05863	Soybean	nucleus	38.78	38.25
KRH51797	Soybean	nucleus	38.08	37.73
KRH15146	Soybean	nucleus	37.85	37.33
KRH61121	Soybean	plastid	38.32	37.02
PGSC0003DMT400066093	Potato	nucleus	35.51	36.45
Solyc10g054030.1.1	Tomato	nucleus	35.05	36.06
KRH20799	Soybean	nucleus	36.92	35.91
VIT_04s0079g00570.t01	Wine grape	cytosol	10.28	35.48
KRH27444	Soybean	nucleus, plastid	35.51	35.19
KRH60799	Soybean	nucleus, plastid	35.05	34.48
Solyc01g109910.2.1	Tomato	nucleus	36.92	34.35
KRH51493	Soybean	nucleus	34.81	34.25
PGSC0003DMT400028504	Potato	cytosol, plastid	8.64	33.64
AT1G75400.1	Thale cress	plastid	35.51	33.41
PGSC0003DMT400089080	Potato	nucleus	34.58	33.11
CDY13812	Canola	cytosol, nucleus, peroxisome	30.37	32.58
CDY39030	Canola	nucleus, plastid	16.12	32.24
Bra003754.1-P	Field mustard	nucleus, plastid	15.42	31.88
CDX68130	Canola	nucleus, plastid	15.42	31.88
Bra031193.1-P	Field mustard	nucleus	30.14	31.31
AT2G21500.2	Thale cress	nucleus	30.61	31.12
CDY47525	Canola	nucleus, plastid	33.64	31.1
CDY69665	Canola	nucleus, plastid	33.41	30.82
CDX82036	Canola	nucleus	28.74	30.45
AT4G39140.3	Thale cress	nucleus	29.44	29.37
Bra015846.1-P	Field mustard	nucleus	33.88	29.29
AT1G19680.1	Thale cress	nucleus	30.37	29.28
Bra008196.1-P	Field mustard	cytosol	16.12	28.99
CDY41965	Canola	nucleus	28.5	28.84
CDY42611	Canola	nucleus	28.04	28.57
Bra011873.1-P	Field mustard	nucleus	28.27	27.94
Bra010702.1-P	Field mustard	nucleus	26.87	27.84
CDX90314	Canola	nucleus	26.87	27.78
VIT_04s0079g00560.t01	Wine grape	cytosol	10.05	27.74
CDY12123	Canola	nucleus	27.34	27.73
CDY56767	Canola	cytosol, nucleus, peroxisome, plastid	25.0	26.75
CDX72716	Canola	nucleus	24.07	26.41
Bra033599.1-P	Field mustard	nucleus	24.3	26.2
TraesCS6D01G284300.1	Wheat	nucleus	18.93	17.57

Protein Annotations

EnsemblPlants:TraesCS3D01G183800.1	EnsemblPlantsGene:TraesCS3D01G183800	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR31150	PANTHER:PTHR31150:SF18	PFAM:PF13639	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr3D:+:169423313..169428639

Molecular Weight (calculated)

47310.8 Da

IEP (calculated)

9.913

GRAVY (calculated)

-0.699

Length

428 amino acids

Sequence
(BLAST)

001: MGANCCIAAK QRPQPCIIPV EVSAYRNVRH SPSWSFRWDN RTHIEDIMEI PTFLSNHSSG SIRPETKSGS IAPTEGFSNG GSPSELFHKV KWQKSEKKME
101: TSKVAQSDPR DRPTASNSSP EAKLCRKSLD MVSVASDTKA STSVPSTPPV VSRADPSSSR GHSLGIDTDS MRKARRSPGY QLYRQVSDSK IPSLRSLNES
201: NSPEGRPSPS MLSVCSNDLS VAGSHGESSD GWSMRTFSEM VASSQRERWS IDSELLGSVS SKMTRSNASN RTTVSPDQEV CKLCLKPLKE RSAWNAQDLG
301: VVAVLLCGHV YHADCLDSLT AEAEKYDPPC PVCTHGEQCT VKLFGKLESK IKNKIPTNVI LDGDLDGSSK HQKKSKRVPR LGTRISMKDS FSRPFLRRHF
401: SIGSRPPRLV SESESTRKKG FWARHWRE

Best Arabidopsis Sequence Match ( AT1G75400.1 )
(BLAST)

001: MGSVCCVAVK DRKVPPSGGP ASSSVHRNSA CSPQWSFRRD NRRRVADEIE GSPYYSPYVA SRGISMDKMS LGSERGTLSE GGTPPDGHLG TPASQKSATP
101: EMSTNSMVPP SSGSSLASSD LIEVKNLVDS PGIVPSAQSK PLFSTPSLPN PVSDLSSAHT RLLPPKSTPS RRARRSPGHQ LFRQVSDSQI LGLKSPINNY
201: SISEGRSSFV LSTCSNDFAT GSQYASSEGG WSMNTFSELV AYSQRDRWSF DSEHLGSGRR KLSGGSSRFS FSPSVVDQQV CGACSKLLTE RSSIATFELP
301: IAAVLACGHV YHAECLETMT TDIEKYDPAC PICTIGEKRV AKITRKALKA EAEAKAKQYK RCKNRVVDSY GESECDEFVF QKMGKREGKA LKLEASCSSK
401: SSSNKSFLKW HFASISSKWN KPSSKDSALK KGFWSRHRNN RSSSSIEGLN QTSPL

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7K7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.