Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011873.1-P | Field mustard | nucleus | 99.76 | 97.46 |
| CDY42611 | Canola | nucleus | 89.36 | 90.0 |
| AT4G39140.3 | Thale cress | nucleus | 83.69 | 82.52 |
| CDY12123 | Canola | nucleus | 79.91 | 80.09 |
| CDY56767 | Canola | cytosol, nucleus, peroxisome, plastid | 70.21 | 74.25 |
| CDY13812 | Canola | cytosol, nucleus, peroxisome | 61.23 | 64.91 |
| CDX72716 | Canola | nucleus | 56.03 | 60.77 |
| CDX90314 | Canola | nucleus | 59.1 | 60.39 |
| CDX82036 | Canola | nucleus | 53.9 | 56.44 |
| PGSC0003DMT400028504 | Potato | cytosol, plastid | 12.29 | 47.27 |
| KRH60799 | Soybean | nucleus, plastid | 47.52 | 46.21 |
| KRH51493 | Soybean | nucleus | 47.04 | 45.75 |
| VIT_03s0038g04400.t01 | Wine grape | nucleus | 47.28 | 43.96 |
| KRH20799 | Soybean | nucleus | 45.15 | 43.41 |
| KRH27444 | Soybean | nucleus, plastid | 43.97 | 43.06 |
| PGSC0003DMT400066093 | Potato | nucleus | 40.19 | 40.77 |
| Solyc01g109910.2.1 | Tomato | nucleus | 43.74 | 40.22 |
| Solyc10g054030.1.1 | Tomato | nucleus | 39.24 | 39.9 |
| PGSC0003DMT400089080 | Potato | nucleus | 42.08 | 39.82 |
| VIT_04s0079g00570.t01 | Wine grape | cytosol | 10.87 | 37.1 |
| CDX68130 | Canola | nucleus, plastid | 16.31 | 33.33 |
| GSMUA_Achr6P08950_001 | Banana | nucleus | 31.68 | 31.83 |
| GSMUA_Achr4P24550_001 | Banana | nucleus | 30.73 | 30.52 |
| CDY39030 | Canola | nucleus, plastid | 15.37 | 30.37 |
| Os01t0261100-01 | Rice | cytosol | 30.73 | 30.16 |
| EES00516 | Sorghum | cytosol | 30.02 | 29.26 |
| CDY47525 | Canola | nucleus, plastid | 31.68 | 28.94 |
| HORVU3Hr1G036310.2 | Barley | plastid | 29.31 | 28.9 |
| CDY69665 | Canola | nucleus, plastid | 31.68 | 28.88 |
| TraesCS3D01G183800.1 | Wheat | plastid | 28.84 | 28.5 |
| Zm00001d008306_P012 | Maize | cytosol | 29.31 | 27.99 |
| TraesCS3B01G208200.1 | Wheat | plastid | 28.37 | 27.97 |
| TraesCS3A01G176600.1 | Wheat | plastid | 28.37 | 27.97 |
| TraesCS3A01G176900.1 | Wheat | cytosol | 28.13 | 27.8 |
| TraesCS3B01G208100.1 | Wheat | cytosol | 28.13 | 27.8 |
| TraesCS3D01G183700.1 | Wheat | cytosol | 27.66 | 27.4 |
| HORVU3Hr1G036290.3 | Barley | cytosol | 27.42 | 27.04 |
| VIT_04s0079g00560.t01 | Wine grape | cytosol | 9.69 | 26.45 |
| OQU86641 | Sorghum | nucleus | 26.71 | 26.4 |
| Zm00001d040317_P005 | Maize | cytosol | 25.3 | 23.36 |
| GSMUA_Achr10P... | Banana | nucleus | 25.3 | 23.26 |
| CDY33767 | Canola | nucleus, plastid | 16.08 | 21.59 |
| CDY49106 | Canola | plastid | 15.84 | 19.76 |
| CDX81616 | Canola | nucleus, plastid | 15.13 | 19.05 |
| CDY54050 | Canola | plastid | 15.6 | 16.97 |
| CDY54049 | Canola | plastid | 15.37 | 16.67 |
| CDY38501 | Canola | nucleus | 13.48 | 15.0 |
Protein Annotations
| EnsemblPlants:CDY41965 | EnsemblPlantsGene:GSBRNA2T00073957001 | Gene3D:3.30.40.10 | GO:A0A078HTU9 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR31150 | PANTHER:PTHR31150:SF2 | PFscan:PS50089 | ProteinID:CDY41965 |
| ProteinID:CDY41965.1 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI0004EE3E4C | UniProt:A0A078HTU9 | MapMan:35.2 |
Description
BnaA01g05370DBnaA01g05370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HTU9]
Coordinates
chrLK032511:-:95898..98367
Molecular Weight (calculated)
46930.6 Da
IEP (calculated)
8.330
GRAVY (calculated)
-0.678
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNACCVAAR DKMVLVVPPN ETERRPSPTW SFRWDNHNRG GRVAGEDSSL TWLSDGISRN DGSEIKFGSA FVSSQGSPLD SFRTQPLHKS PASDLSFPRN
101: SSMDTVFEQK ENDSTQSVAP SYPSPAQFSL SHTSSFPASP LSPQSYFHPS SSASSLKLTQ RPRLSKQVSD SRIYGMNSLS RSSATEETQE IPLRYGSSQS
201: GPSESWSLQA FSEMMSSSRS NEPLSYDNDF FGLDRDKIDH HGNRVISNHH QQTCGACSRP LSEKSMWSSQ KIFMTNELSV SAILACGHVY HGECLEQMTP
301: EIDKFDPSCP ICTFGEKKTA KLSEKALKVE MDLKARHNKR LRNRVLDSDF DCDDLVMYDH SHMPAAAADK SPELVSSSSV KGYSAKPFLA RHFSFGSRGN
401: SKSIKENLPV KKKGFFWTKS SKI
101: SSMDTVFEQK ENDSTQSVAP SYPSPAQFSL SHTSSFPASP LSPQSYFHPS SSASSLKLTQ RPRLSKQVSD SRIYGMNSLS RSSATEETQE IPLRYGSSQS
201: GPSESWSLQA FSEMMSSSRS NEPLSYDNDF FGLDRDKIDH HGNRVISNHH QQTCGACSRP LSEKSMWSSQ KIFMTNELSV SAILACGHVY HGECLEQMTP
301: EIDKFDPSCP ICTFGEKKTA KLSEKALKVE MDLKARHNKR LRNRVLDSDF DCDDLVMYDH SHMPAAAADK SPELVSSSSV KGYSAKPFLA RHFSFGSRGN
401: SKSIKENLPV KKKGFFWTKS SKI
001: MGNACCVAAR DKMVVPNSSA GENLQRSNIR HSPSWSFRWD NRGRVAGEET SLSWLSDGIS RNDGSEIKFE SAFVSSEGSP LDSFRTQTLQ KSPASDLSFP
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI
101: RNSSMNTVFE QKENVSTESA APSYLSPAQL SLSLASQPSS FPTSPLSSQS YLHPASSSTL KLTQHPRLSK QVSDGQIYGQ NSLSRSSATE ERQGTPTRYD
201: SSQSGPSEGW SLQAFSEMMS SSRSNKALSY DNYDNDCFGL QRDKIDHHGN RMSKHQQHTC GACSRPLSEK SLWSSQKIFM TNELSVSAIL ACGHVYHGEC
301: LEQMTPEIDK FDPSCPICTM GEKKTAKLSE KALKVEMDLK ARHNKRLRNR VLDSDFDCDD FVMFDHSHRT AAAASKSPRL VSSSSAKSYS AKPFLARHFS
401: FGSRSNYKSP KENLPVKKKG FFWTKSSKI
Arabidopsis Description
RING finger family protein [Source:UniProtKB/TrEMBL;Acc:Q9T023]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.