Factsheet for Zm00001d008306_P012

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017475_P002
Zm00001d017793_P001
Zm00001d018961_P002
Zm00001d034443_P001
Zm00001d051589_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19680.1	Zm00001d017793_P001	AT3G27960.1	21798944
AT1G19680.1	Zm00001d051589_P001	AT3G27960.1	21798944
AT1G75400.1	Zm00001d018961_P002	AT3G22960.1	21798944
AT1G75400.1	Zm00001d034443_P001	AT3G22960.1	21798944
AT1G75400.1	Zm00001d017475_P002	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00516	Sorghum	cytosol	89.62	91.47
Os01t0261100-01	Rice	cytosol	77.2	79.35
HORVU3Hr1G036310.2	Barley	plastid	76.52	79.02
TraesCS3B01G208200.1	Wheat	plastid	76.07	78.55
TraesCS3D01G183800.1	Wheat	plastid	75.62	78.27
TraesCS3A01G176600.1	Wheat	plastid	75.62	78.09
Zm00001d040317_P005	Maize	cytosol	78.56	75.98
GSMUA_Achr4P24550_001	Banana	nucleus	46.28	48.12
VIT_03s0038g04400.t01	Wine grape	nucleus	41.99	40.88
VIT_18s0001g13060.t01	Wine grape	nucleus	40.18	40.18
KRH05863	Soybean	nucleus	38.37	39.17
KRH15146	Soybean	nucleus	37.92	38.71
KRH61121	Soybean	plastid	38.15	38.15
VIT_04s0079g00570.t01	Wine grape	cytosol	10.61	37.9
KRH51797	Soybean	nucleus	36.79	37.73
KRH20799	Soybean	nucleus	36.57	36.82
Solyc10g054030.1.1	Tomato	nucleus	33.86	36.06
PGSC0003DMT400066093	Potato	nucleus	33.86	35.97
KRH27444	Soybean	nucleus, plastid	34.99	35.88
KRH60799	Soybean	nucleus, plastid	34.99	35.63
KRH51493	Soybean	nucleus	34.99	35.63
Solyc01g109910.2.1	Tomato	nucleus	36.12	34.78
AT1G75400.1	Thale cress	plastid	35.67	34.73
CDY13812	Canola	cytosol, nucleus, peroxisome	31.15	34.59
Bra003754.1-P	Field mustard	nucleus, plastid	15.8	33.82
CDX68130	Canola	nucleus, plastid	15.8	33.82
PGSC0003DMT400089080	Potato	nucleus	34.09	33.78
CDY47525	Canola	nucleus, plastid	34.76	33.26
Bra031193.1-P	Field mustard	nucleus	30.93	33.25
CDY69665	Canola	nucleus, plastid	34.54	32.97
CDY39030	Canola	nucleus, plastid	15.8	32.71
AT2G21500.2	Thale cress	nucleus	30.93	32.54
CDX82036	Canola	nucleus	28.67	31.44
Bra015846.1-P	Field mustard	nucleus	34.99	31.31
PGSC0003DMT400028504	Potato	cytosol, plastid	7.67	30.91
Bra008196.1-P	Field mustard	cytosol	16.48	30.67
AT4G39140.3	Thale cress	nucleus	28.44	29.37
CDY41965	Canola	nucleus	27.99	29.31
CDY42611	Canola	nucleus	27.54	29.05
AT1G19680.1	Thale cress	nucleus	28.89	28.83
Bra011873.1-P	Field mustard	nucleus	27.77	28.41
CDY12123	Canola	nucleus	26.64	27.96
Bra010702.1-P	Field mustard	nucleus	25.73	27.6
CDX90314	Canola	nucleus	25.73	27.54
CDY56767	Canola	cytosol, nucleus, peroxisome, plastid	24.83	27.5
CDX72716	Canola	nucleus	24.15	27.44
VIT_04s0079g00560.t01	Wine grape	cytosol	9.26	26.45
Bra033599.1-P	Field mustard	nucleus	23.25	25.94
Zm00001d047558_P001	Maize	nucleus	17.83	17.21
Zm00001d028989_P002	Maize	endoplasmic reticulum, plasma membrane	15.8	15.22
Zm00001d014199_P003	Maize	plastid	15.35	10.38

Protein Annotations

EntrezGene:100274198	Gene3D:3.30.40.10	MapMan:35.2	UniProt:A0A1D6FBR8	ProteinID:AQK89492.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF00097	PFscan:PS50089
PANTHER:PTHR31150	PANTHER:PTHR31150:SF18	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000845184B	EnsemblPlantsGene:Zm00001d008306
EnsemblPlants:Zm00001d008306_P012	EnsemblPlants:Zm00001d008306_T012	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

RING/U-box superfamily protein

Coordinates

chr8:+:4742429..4746841

Molecular Weight (calculated)

49061.6 Da

IEP (calculated)

10.044

GRAVY (calculated)

-0.705

Length

443 amino acids

Sequence
(BLAST)

001: MGANCCVAAK ERTQPCITPI EVSTYRNVRR SPSWNIRWDN RTHIEDIMDI PTLFSNHSSG SIHPDTKSGS IAPTEGFSNG NSLGTSPSNV FHGAKWHKSD
101: KKMEARKVTK TLFTDFYLFS ADRSTASNSS PETKLSRKSL DISSVASDLK TSVSVPSTPP LVSRADPSSS KGHSQPTDSD LMKKAWRSPG YQLYRQVSDS
201: KIPSLRSLNE IRSPEGRPPS SMLSACSNDL SAAGSYGESS DGWSMRTFSE MVSTSQRERW SLDSELLGSI SSKMTRSSAS SSTTRPPDQD VCKLCLKLLK
301: ERSTWNAQEL AVVAVLLCGH AYHADCLDSI TTEADKYDPP CPVCTHGEKF SVKLFGKLES KIKNKIPKNV SVDINLDGNS SNKHQKKGRR EPRLGTSSSM
401: KVPFSRPFLR RHFSIGSRPP RSVSETDSTR KKGFWARHWE RVE

Best Arabidopsis Sequence Match ( AT1G19680.1 )
(BLAST)

001: MGSVCCVAAK DRNVPSGAID NSVCSPSWSF RRDNRRRVAD EIKDSSNHNV GSRGIDIDKL SLGLERGPPS SETGGLATLG SQKSADSEMG TASMVTAPLA
101: GTSLAIRSPS DVSLASPVRV EVKNIVDSSD IVSSVLPNPS SSTSVSDLPS AHTHSLPPRS TPSRRARGSP GQQLFRQVSD SQTLGLKSPN NYSTSEGRSS
201: FVLSTCSNDT ATGSHFASSE GGWSINAFCE LVAQSQRERW SFDNEHLGSG RRRLSGCSSS RFSCSPSVDQ QTCGRCSKLL TERSPVARFD LPIPAVLACG
301: HVYHAACLET MTNETEKYDP TCPICTETQV TKLSRKALKA EAELKATSYK RCKNRVVDSY VRSECEDLMF QNLGKREGKG LKMDPSSNTK GSTSKSFMKW
401: HFGSVSTKWS KARDSTSKKS FWSRHSNKRL SHSFSSVEGL NQAT

Arabidopsis Description

At1g19680 [Source:UniProtKB/TrEMBL;Acc:Q9FXG6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.