Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER92330 | Sorghum | nucleus | 90.63 | 90.04 |
| Os03t0326300-01 | Rice | nucleus | 76.03 | 78.43 |
| HORVU6Hr1G075350.1 | Barley | nucleus | 76.03 | 75.54 |
| TraesCS6D01G284300.1 | Wheat | nucleus | 75.16 | 74.84 |
| TraesCS6B01G333400.1 | Wheat | nucleus | 74.95 | 74.62 |
| TraesCS6A01G305100.2 | Wheat | nucleus | 74.73 | 74.24 |
| Zm00001d028989_P002 | Maize | endoplasmic reticulum, plasma membrane | 58.61 | 58.48 |
| VIT_08s0007g07610.t01 | Wine grape | nucleus | 31.15 | 39.29 |
| GSMUA_Achr5P27760_001 | Banana | nucleus | 38.78 | 28.25 |
| Zm00001d008306_P012 | Maize | cytosol | 17.21 | 17.83 |
| Zm00001d040317_P005 | Maize | cytosol | 16.99 | 17.03 |
| Zm00001d014199_P003 | Maize | plastid | 22.66 | 15.88 |
Protein Annotations
| EMBL:BT069232 | EMBL:EU957560 | EnsemblPlants:Zm00001d047558_P001 | EnsemblPlants:Zm00001d047558_T001 | EnsemblPlantsGene:Zm00001d047558 | EntrezGene:100275703 |
| Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR31150 |
| PANTHER:PTHR31150:SF9 | PFscan:PS50089 | ProteinID:AQL06982.1 | ProteinID:AQL06983.1 | SEG:seg | SMART:SM00184 |
| SUPFAM:SSF57850 | UniParc:UPI000182D05B | UniProt:B6SXU5 | MapMan:35.2 | : | : |
Description
RING/U-box superfamily protein
Coordinates
chr9:+:135452418..135457138
Molecular Weight (calculated)
50780.9 Da
IEP (calculated)
9.535
GRAVY (calculated)
-0.808
Length
459 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPTEPRWRI NSSFSPPTSR RWDCRYSSDG LPHRVHDAPH DHPPYVSSLS SHSKGSRNAF GSDQYLSHHH SVSDGALSYF GSPADSLQAP RWTPSLQRFD
101: LGEFSTPAGG SRPETSDYPQ SSERPLTATS SFSSASPFSE SSQLASSSKQ PAPYLPRNHM GRRSFMSKPV YPLVFRNPVS ESEACRMLEV GNAGRATPSD
201: DSQASPLWRR SLASPDLKFH NAPNELGKME TSPEPNTSSR REGFRWSNAS SYDFGYDGDA IDISDHISIE SQRSPTSSAR FLKCGLCERF LHQKSPWTSN
301: RIVRNADMPV AAVLPCRHVF HADCLEESTA KTEVHEPPCP LCARATDDEG HVSFSEPLHV ALRSARRNLL LGTGAGGNSG ISDPPRTDRG LKRNNSAVMP
401: RRSGGALFRN RFKKQFPFKA RIGKELFGGR VLNKVGLSLS SGQHDDHRQQ APKHDRPMK
101: LGEFSTPAGG SRPETSDYPQ SSERPLTATS SFSSASPFSE SSQLASSSKQ PAPYLPRNHM GRRSFMSKPV YPLVFRNPVS ESEACRMLEV GNAGRATPSD
201: DSQASPLWRR SLASPDLKFH NAPNELGKME TSPEPNTSSR REGFRWSNAS SYDFGYDGDA IDISDHISIE SQRSPTSSAR FLKCGLCERF LHQKSPWTSN
301: RIVRNADMPV AAVLPCRHVF HADCLEESTA KTEVHEPPCP LCARATDDEG HVSFSEPLHV ALRSARRNLL LGTGAGGNSG ISDPPRTDRG LKRNNSAVMP
401: RRSGGALFRN RFKKQFPFKA RIGKELFGGR VLNKVGLSLS SGQHDDHRQQ APKHDRPMK
001: MSDESPAFAL HSGSSRQRKS LEFRFQQSPR WAPYSSASDG NEQKTSLVNN SLTRPNSSNP QCLNEENGFD RDSTAISTSF RSLLSLSESS VPWETPTNNQ
101: SSSLTHCSYP RVFCNPVSVC ENPEPDHTQE DSSTNPGSSI MMSTRNHQGS PVEEEVSPNS SSNDMLLDVE RSNDTEVANP RSEQGSMTHQ RCGICKKLLS
201: QKSPWSSYKI LRSRDMPATG VFPCHHVYHV ECLDKATPTA QTRDPSCPVC SNTIGVMEQP LIAPETLQMA LRSLRRSRTA LELETVRVPS NDNQRRHNTR
301: RSHKWDKLSC CLNISFSSSS
101: SSSLTHCSYP RVFCNPVSVC ENPEPDHTQE DSSTNPGSSI MMSTRNHQGS PVEEEVSPNS SSNDMLLDVE RSNDTEVANP RSEQGSMTHQ RCGICKKLLS
201: QKSPWSSYKI LRSRDMPATG VFPCHHVYHV ECLDKATPTA QTRDPSCPVC SNTIGVMEQP LIAPETLQMA LRSLRRSRTA LELETVRVPS NDNQRRHNTR
301: RSHKWDKLSC CLNISFSSSS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FK45]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.