Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G284300.1 | Wheat | nucleus | 80.9 | 78.09 |
| HORVU6Hr1G075350.1 | Barley | nucleus | 80.67 | 77.71 |
| TraesCS6B01G333400.1 | Wheat | nucleus | 80.22 | 77.44 |
| EER92330 | Sorghum | nucleus | 80.22 | 77.27 |
| TraesCS6A01G305100.2 | Wheat | nucleus | 80.0 | 77.06 |
| Zm00001d047558_P001 | Maize | nucleus | 78.43 | 76.03 |
| Zm00001d028989_P002 | Maize | endoplasmic reticulum, plasma membrane | 53.03 | 51.3 |
| VIT_08s0007g07610.t01 | Wine grape | nucleus | 32.81 | 40.11 |
| GSMUA_Achr5P27760_001 | Banana | nucleus | 41.57 | 29.37 |
| Os10t0406200-01 | Rice | nucleus | 25.39 | 26.1 |
| Os01t0261100-01 | Rice | cytosol | 17.98 | 18.56 |
Protein Annotations
| EMBL:AK066058 | EnsemblPlants:Os03t0326300-01 | EnsemblPlantsGene:Os03g0326300 | EntrezGene:4332711 | Gene3D:3.30.40.10 | InterPro:IPR001841 |
| InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR31150 | PANTHER:PTHR31150:SF9 | PFscan:PS50089 |
| ProteinID:ABF95718.1 | ProteinID:BAF11905.1 | ProteinID:BAS83994.1 | RefSeq:XP_015631705.1 | SEG:seg | SMART:SM00184 |
| SUPFAM:SSF57850 | UniParc:UPI0000DB4214 | UniProt:Q10M20 | MapMan:35.2 | : | : |
Description
RING finger proteinZinc finger, RING-type domain containing protein. (Os03t0326300-01);Hypothetical conserved gene. (Os03t0326300-02);Hypothetical conserved gene. (Os03t0326300-03)
Coordinates
chr3:-:11902823..11907356
Molecular Weight (calculated)
49110.7 Da
IEP (calculated)
9.713
GRAVY (calculated)
-0.792
Length
445 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPNEPCWRM NSSFSPPMSR RWDCRNPSDG LPHRIHDAPP YVSSLSSHSK GSRSAFGSDQ YLNHQHSVSD GALSYFGSPA DSLQAPRWTP SLQRFDLGEF
101: STPAGSRPDT SGYPQSSERQ LTAVSSFSSA SPFSESSQLA SSSKPPYLHL PRNHLGRRSF MSKPVYPLVF RNPVSEAEAS GMPEASNIGR TTPSDDSPVW
201: RRSLASPELK FHNALSEFRK VEASPEPNTS SRREGFRWSN ASSYDFGYDG DAIDISDHIS VESQRSPTSS VRFLKCGLCE RFLRQKSPWT SNRIVQNSDM
301: PVAAVLPCRH VFHADCLEES TPKSQVHEPP CPLCTRGTDD EGCVSFSEPL HVALRSARRN QGNSFSLGGS GGSTSANPSR SDHGLKRNQS ALVARRSGTM
401: FRNRFKKQFS FKGRFGKDLF GGRVFKKVGS SSSSGQQDDR QQPKA
101: STPAGSRPDT SGYPQSSERQ LTAVSSFSSA SPFSESSQLA SSSKPPYLHL PRNHLGRRSF MSKPVYPLVF RNPVSEAEAS GMPEASNIGR TTPSDDSPVW
201: RRSLASPELK FHNALSEFRK VEASPEPNTS SRREGFRWSN ASSYDFGYDG DAIDISDHIS VESQRSPTSS VRFLKCGLCE RFLRQKSPWT SNRIVQNSDM
301: PVAAVLPCRH VFHADCLEES TPKSQVHEPP CPLCTRGTDD EGCVSFSEPL HVALRSARRN QGNSFSLGGS GGSTSANPSR SDHGLKRNQS ALVARRSGTM
401: FRNRFKKQFS FKGRFGKDLF GGRVFKKVGS SSSSGQQDDR QQPKA
001: MGSLCCVAAK SDRSNSTSGD FSFGLHEPYW RTNTSFSPPS SRWDVHGLMD GISCYGSSTS SNANVLRSPD LSQALHWTPN DFESATRRDQ IVKQLPGTSR
101: NVGIGDSEPG RNSSSRRFFL SKPVHPILHP SDNVRDTASD SADACSWSSG TPSSIDSVDV PEPVLDWNNN STKAQQVAAS STFKCGLCNR YLSQKSPWGS
201: RSIVRNRDMP VTGVLSCQHV FHVECLDQST PKIQRNDPLC PICTKQEGEH FKSNNIVPRL KPLYEDGPSS RPWGCAQAGD CVESAVNVPP KNTMMMINRN
301: RIRKSLSLRG NSSKDFSRKM KRSNSVAMEN LANQVSLVHS RGKEKVSW
101: NVGIGDSEPG RNSSSRRFFL SKPVHPILHP SDNVRDTASD SADACSWSSG TPSSIDSVDV PEPVLDWNNN STKAQQVAAS STFKCGLCNR YLSQKSPWGS
201: RSIVRNRDMP VTGVLSCQHV FHVECLDQST PKIQRNDPLC PICTKQEGEH FKSNNIVPRL KPLYEDGPSS RPWGCAQAGD CVESAVNVPP KNTMMMINRN
301: RIRKSLSLRG NSSKDFSRKM KRSNSVAMEN LANQVSLVHS RGKEKVSW
Arabidopsis Description
Putative mandelonitrile lyase [Source:UniProtKB/TrEMBL;Acc:Q8GXX6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.