Factsheet for Os01t0261100-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0656300-01
Os02t0708400-01
Os06t0679100-00
Os07t0181000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19680.1	Os02t0708400-01	AT3G27960.1	21798944
AT1G75400.1	Os07t0181000-01	AT3G22960.1	21798944
AT1G75400.1	Os02t0656300-01	AT3G48150.1	21798944
AT1G75400.1	Os06t0679100-00	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G036310.2	Barley	plastid	84.45	84.85
TraesCS3B01G208200.1	Wheat	plastid	83.99	84.38
TraesCS3D01G183800.1	Wheat	plastid	83.76	84.35
TraesCS3A01G176600.1	Wheat	plastid	83.76	84.15
EES00516	Sorghum	cytosol	83.06	82.49
Zm00001d008306_P012	Maize	cytosol	79.35	77.2
Zm00001d040317_P005	Maize	cytosol	74.01	69.65
GSMUA_Achr4P24550_001	Banana	nucleus	50.81	51.41
VIT_03s0038g04400.t01	Wine grape	nucleus	43.62	41.32
VIT_18s0001g13060.t01	Wine grape	nucleus	42.0	40.86
KRH05863	Soybean	nucleus	40.37	40.09
KRH51797	Soybean	nucleus	39.68	39.58
KRH15146	Soybean	nucleus	39.68	39.4
KRH61121	Soybean	plastid	39.91	38.83
PGSC0003DMT400066093	Potato	nucleus	36.19	37.41
Solyc10g054030.1.1	Tomato	nucleus	35.73	37.02
KRH20799	Soybean	nucleus	37.59	36.82
VIT_04s0079g00570.t01	Wine grape	cytosol	10.44	36.29
Solyc01g109910.2.1	Tomato	nucleus	38.28	35.87
KRH51493	Soybean	nucleus	35.73	35.4
KRH27444	Soybean	nucleus, plastid	35.27	35.19
KRH60799	Soybean	nucleus, plastid	35.5	35.17
AT1G75400.1	Thale cress	plastid	36.66	34.73
PGSC0003DMT400028504	Potato	cytosol, plastid	8.82	34.55
PGSC0003DMT400089080	Potato	nucleus	35.73	34.45
Bra003754.1-P	Field mustard	nucleus, plastid	16.47	34.3
CDX68130	Canola	nucleus, plastid	16.47	34.3
CDY13812	Canola	cytosol, nucleus, peroxisome	31.55	34.09
CDY39030	Canola	nucleus, plastid	16.71	33.64
CDY47525	Canola	nucleus, plastid	35.96	33.48
CDY69665	Canola	nucleus, plastid	35.73	33.19
Bra031193.1-P	Field mustard	nucleus	31.32	32.77
AT2G21500.2	Thale cress	nucleus	31.79	32.54
CDX82036	Canola	nucleus	29.93	31.93
Bra015846.1-P	Field mustard	nucleus	36.19	31.52
CDY41965	Canola	nucleus	30.16	30.73
AT1G19680.1	Thale cress	nucleus	31.55	30.63
AT4G39140.3	Thale cress	nucleus	30.16	30.3
Bra008196.1-P	Field mustard	cytosol	16.47	29.83
Bra011873.1-P	Field mustard	nucleus	29.93	29.79
CDY42611	Canola	nucleus	29.0	29.76
CDY12123	Canola	nucleus	28.54	29.15
CDX90314	Canola	nucleus	27.15	28.26
CDY56767	Canola	cytosol, nucleus, peroxisome, plastid	26.22	28.25
CDX72716	Canola	nucleus	25.52	28.21
Bra010702.1-P	Field mustard	nucleus	26.91	28.09
Bra033599.1-P	Field mustard	nucleus	25.29	27.46
VIT_04s0079g00560.t01	Wine grape	cytosol	9.51	26.45
Os03t0326300-01	Rice	nucleus	18.56	17.98
Os10t0406200-01	Rice	nucleus	15.78	15.7

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	EntrezGene:4325119	EMBL:AK102361	ProteinID:BAD81235.1	ProteinID:BAD81441.1
ProteinID:BAF04561.1	ProteinID:BAS71424.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR001841
InterPro:IPR013083	EnsemblPlantsGene:Os01g0261100	EnsemblPlants:Os01t0261100-01	PFAM:PF00097	PFscan:PS50089	PANTHER:PTHR31150
PANTHER:PTHR31150:SF18	UniProt:Q5NAS8	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000049E6E1	RefSeq:XP_015649793.1
InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

RING finger proteinZinc finger, RING-type domain containing protein. (Os01t0261100-01)

Coordinates

chr1:+:8786623..8792221

Molecular Weight (calculated)

47283.4 Da

IEP (calculated)

9.960

GRAVY (calculated)

-0.721

Length

431 amino acids

Sequence
(BLAST)

001: MGANCCIAAK ERPQPCVTPI EVSAFRNVRH SPSWSFRWDN RTHIEDIMEM PALFSNHSSG SIRPETKSGS IAPTDGFSNG GSPSDMFNKL KCHKSDRKRE
101: SSKIARSDLR AGRSTTSNSS PEAKLSRKSL DTVSVASDSK MSISVPSTPP AISRADPSSS SRGHSLPTDA DSMRKARRSP GYQLYRQVSD SKIPSLRSLN
201: EGASPEGRPS SSMLSVCSND LSAVGSHGES SDGWSMRTFS EMVASSQRER WSVDSELLGS VSSKMTRSNA SNNPTTHSPD QEVCKLCLKL LKERSTWNAQ
301: ELAVVAVLLC GHVYHADCLD SLTAEADKYD PPCPVCTHGE KCTVKLFGKL ESKTKNKIPK NVIVDVNLDG SSKHQKESRR EPRLGTSSSL KGSFSRPFLR
401: RHFSIGSRPS QSISESESAR KKGFWARHWR E

Best Arabidopsis Sequence Match ( AT1G75400.1 )
(BLAST)

001: MGSVCCVAVK DRKVPPSGGP ASSSVHRNSA CSPQWSFRRD NRRRVADEIE GSPYYSPYVA SRGISMDKMS LGSERGTLSE GGTPPDGHLG TPASQKSATP
101: EMSTNSMVPP SSGSSLASSD LIEVKNLVDS PGIVPSAQSK PLFSTPSLPN PVSDLSSAHT RLLPPKSTPS RRARRSPGHQ LFRQVSDSQI LGLKSPINNY
201: SISEGRSSFV LSTCSNDFAT GSQYASSEGG WSMNTFSELV AYSQRDRWSF DSEHLGSGRR KLSGGSSRFS FSPSVVDQQV CGACSKLLTE RSSIATFELP
301: IAAVLACGHV YHAECLETMT TDIEKYDPAC PICTIGEKRV AKITRKALKA EAEAKAKQYK RCKNRVVDSY GESECDEFVF QKMGKREGKA LKLEASCSSK
401: SSSNKSFLKW HFASISSKWN KPSSKDSALK KGFWSRHRNN RSSSSIEGLN QTSPL

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7K7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.