Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plasma membrane 1
- plastid 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG38574 | Sorghum | plastid | 70.9 | 72.07 |
| Zm00001d014199_P003 | Maize | plastid | 70.9 | 46.87 |
| KRH74897 | Soybean | nucleus | 30.02 | 35.04 |
| Solyc05g007820.2.1 | Tomato | nucleus | 20.32 | 34.65 |
| GSMUA_Achr3P01890_001 | Banana | nucleus | 39.03 | 32.44 |
| KRH70752 | Soybean | nucleus | 30.25 | 31.64 |
| PGSC0003DMT400047431 | Potato | nucleus, plastid | 29.56 | 31.6 |
| Bra026851.1-P | Field mustard | nucleus, plastid | 22.17 | 30.48 |
| CDY33767 | Canola | nucleus, plastid | 22.17 | 30.48 |
| CDX81616 | Canola | nucleus, plastid | 23.33 | 30.06 |
| AT1G14180.1 | Thale cress | nucleus | 23.09 | 28.74 |
| CDY49106 | Canola | plastid | 22.4 | 28.61 |
| Bra019673.1-P | Field mustard | nucleus, plastid | 22.17 | 28.32 |
| Os03t0326300-01 | Rice | nucleus | 26.1 | 25.39 |
| Os01t0261100-01 | Rice | cytosol | 15.7 | 15.78 |
Protein Annotations
| EnsemblPlants:Os10t0406200-01 | EnsemblPlantsGene:Os10g0406200 | EntrezGene:4348584 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR31150 | PANTHER:PTHR31150:SF7 | PFscan:PS50089 | ProteinID:ABB47573.1 |
| ProteinID:BAT10774.1 | RefSeq:XP_015614608.1 | RefSeq:XP_015614609.1 | SEG:seg | UniParc:UPI00005E1E5E | UniProt:Q338G0 |
| MapMan:35.2 | : | : | : | : | : |
Description
RING finger protein OsRFPH2-11, RING-H2 protein 11, heavy metal induced RING E3 ligase 1Hypothetical conserved gene. (Os10t0406200-01)
Coordinates
chr10:-:13870240..13875398
Molecular Weight (calculated)
47038.4 Da
IEP (calculated)
7.703
GRAVY (calculated)
-0.670
Length
433 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSLCCVASR PHGASTASRE WSSIGRSDPL WRTNAGFSPP LSRRWEYRIN SEGLSYGSQG DSGAAAHYGS SLSSNSKEPS RSWERSDVPP DHHRYSTSEG
101: AISYFNSPDV TFQNHHIMLP MLQDSGIDEY MRVSVAEPIG ALLLSEGISG QQNSGGSTSS RSDGSEYDIV PKSYSSTPRN FPSRRSFLSK PIHPLSFPEH
201: ALEGQETDSP VANASTSSPM PSEFKAIGEI RPSGLMDYAY ASGSHGESAN WSAASSMDLT DLSERHDAER SGPLRSNNIM DRTRCDLCER LLSKRSPWGS
301: RRIVRTGDLP VAGVLPCCHV YHAECLERTT PKGQKHDPPC PACDRLSGKD TEQWSICRLR NGFPRLRSLG EGPSRVWSCA QAGDCVAGAV QIPRASSISL
401: LSRSGHKRHH AASKGESGKD WAETSSSSRT ACM
101: AISYFNSPDV TFQNHHIMLP MLQDSGIDEY MRVSVAEPIG ALLLSEGISG QQNSGGSTSS RSDGSEYDIV PKSYSSTPRN FPSRRSFLSK PIHPLSFPEH
201: ALEGQETDSP VANASTSSPM PSEFKAIGEI RPSGLMDYAY ASGSHGESAN WSAASSMDLT DLSERHDAER SGPLRSNNIM DRTRCDLCER LLSKRSPWGS
301: RRIVRTGDLP VAGVLPCCHV YHAECLERTT PKGQKHDPPC PACDRLSGKD TEQWSICRLR NGFPRLRSLG EGPSRVWSCA QAGDCVAGAV QIPRASSISL
401: LSRSGHKRHH AASKGESGKD WAETSSSSRT ACM
001: MVLAVMDLPH HQMLMFFVVP TFLKLFIGHL TILNLLQEEI VKQLPGTSRN VGIGDSEPGR NSSSRRFFLS KPVHPILHPS DNVRDTASDS ADACSWSSGT
101: PSSIDSVDVP EPVLDWNNNS TKAQQVAASS TFKCGLCNRY LSQKSPWGSR SIVRNRDMPV TGVLSCQHVF HVECLDQSTP KIQRNDPLCP ICTKQEGEHF
201: KSNNIVPRLK PLYEDGPSSR PWGCAQAGDC VESAVNVPPK NTMMMINRNR IRKSLSLRGN SSKDFSRKMK RSNSVAMENL ANQVSLVHSR GKEKVSW
101: PSSIDSVDVP EPVLDWNNNS TKAQQVAASS TFKCGLCNRY LSQKSPWGSR SIVRNRDMPV TGVLSCQHVF HVECLDQSTP KIQRNDPLCP ICTKQEGEHF
201: KSNNIVPRLK PLYEDGPSSR PWGCAQAGDC VESAVNVPPK NTMMMINRNR IRKSLSLRGN SSKDFSRKMK RSNSVAMENL ANQVSLVHSR GKEKVSW
Arabidopsis Description
Putative mandelonitrile lyase [Source:UniProtKB/TrEMBL;Acc:Q8GXX6]
SUBAcon: [endoplasmic reticulum,plasma membrane]
SUBAcon: [endoplasmic reticulum,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.