Factsheet for PGSC0003DMT400047431

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g007820.2.1	Tomato	nucleus	54.07	86.22
KRH74897	Soybean	nucleus	49.38	53.91
KRH70752	Soybean	nucleus	51.85	50.72
Bra026851.1-P	Field mustard	nucleus, plastid	29.88	38.41
CDY33767	Canola	nucleus, plastid	29.88	38.41
AT1G14180.1	Thale cress	nucleus	31.36	36.49
CDX81616	Canola	nucleus, plastid	30.12	36.31
Bra019673.1-P	Field mustard	nucleus, plastid	29.14	34.81
CDY49106	Canola	plastid	29.14	34.81
GSMUA_Achr3P01890_001	Banana	nucleus	42.22	32.82
KXG38574	Sorghum	plastid	32.35	30.75
Os10t0406200-01	Rice	nucleus	31.6	29.56
Zm00001d014199_P003	Maize	plastid	32.1	19.85
PGSC0003DMT400089080	Potato	nucleus	20.74	18.79
PGSC0003DMT400078932	Potato	nucleus	10.86	18.64
PGSC0003DMT400028504	Potato	cytosol, plastid	4.94	18.18
PGSC0003DMT400066093	Potato	nucleus	18.02	17.51
PGSC0003DMT400020268	Potato	nucleus	9.38	16.89

Protein Annotations

EnsemblPlants:PGSC0003DMT400047431	EnsemblPlantsGene:PGSC0003DMG400018432	EntrezGene:102606114	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR31150	PANTHER:PTHR31150:SF7	PFscan:PS50089	PGSC:PGSC0003DMG400018432
RefSeq:XP_006355117.1	RefSeq:XP_015167672.1	SEG:seg	SUPFAM:SSF57850	UniParc:UPI00029603F8	UniProt:M1BKR4
MapMan:35.2	:	:	:	:	:

Description

Mandelonitrile lyase [Source:PGSC_GENE;Acc:PGSC0003DMG400018432]

Coordinates

chr5:-:4669790..4676971

Molecular Weight (calculated)

44455.5 Da

IEP (calculated)

8.676

GRAVY (calculated)

-0.645

Length

405 amino acids

Sequence
(BLAST)

001: MGPHEPYWRT NSSFSPAPSR WDFRFQPETL SFGSNDGVQL YGSSASSNSR DSRSWVRGNQ LANHQYLISD GVGAYCSSPS DISPAQQWTP PAIQEINIDD
101: FGTSRRDAIT RPFTFSPTME GASIARDGRG STSSRSDSSD CDSITKSHSS YRSFPSRRFF MSKPIHPLSF PTETSRREAI DSLSAGFLEF DASTSQRDKH
201: RLSSASGSLD LTEASESFQS DFLSKPCNPS DGFRCGLCER FLSQRSPWSS RRIVRSEDMP VAGVLSCRHV FHAECLEQAT PKSCKSDPPC PICAKLEEGS
301: SPEQRVFSKF FPRLKTFSEE GPSKPWGCAH SGDCVEGALH GPSRGTMLSL NKNRIRKNLS LKGNSVKEFP GKLRKTNTFS SQLFIGSVDH AMVGSSKASA
401: GSGLK

Best Arabidopsis Sequence Match ( AT1G14180.1 )
(BLAST)

001: MGSLCCVAAK SDRSNSTSGD FSFGLHEPYW RTNTSFSPPS SRWDVHGLMD GISCYGSSTS SNANVLRSPD LSQALHWTPN DFESATRRDQ IVKQLPGTSR
101: NVGIGDSEPG RNSSSRRFFL SKPVHPILHP SDNVRDTASD SADACSWSSG TPSSIDSVDV PEPVLDWNNN STKAQQVAAS STFKCGLCNR YLSQKSPWGS
201: RSIVRNRDMP VTGVLSCQHV FHVECLDQST PKIQRNDPLC PICTKQEGEH FKSNNIVPRL KPLYEDGPSS RPWGCAQAGD CVESAVNVPP KNTMMMINRN
301: RIRKSLSLRG NSSKDFSRKM KRSNSVAMEN LANQVSLVHS RGKEKVSW

Arabidopsis Description

Putative mandelonitrile lyase [Source:UniProtKB/TrEMBL;Acc:Q8GXX6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.