CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0406200-01	Rice	nucleus	72.07	70.9
Zm00001d014199_P003	Maize	plastid	83.1	54.05
KRH74897	Soybean	nucleus	30.28	34.77
Solyc05g007820.2.1	Tomato	nucleus	20.19	33.86
GSMUA_Achr3P01890_001	Banana	nucleus	41.08	33.59
PGSC0003DMT400047431	Potato	nucleus, plastid	30.75	32.35
KRH70752	Soybean	nucleus	30.52	31.4
Bra026851.1-P	Field mustard	nucleus, plastid	22.07	29.84
CDY33767	Canola	nucleus, plastid	22.07	29.84
CDX81616	Canola	nucleus, plastid	22.77	28.87
CDY49106	Canola	plastid	22.3	28.02
AT1G14180.1	Thale cress	nucleus	22.54	27.59
Bra019673.1-P	Field mustard	nucleus, plastid	21.83	27.43
EER92330	Sorghum	nucleus	24.88	22.94
EES00516	Sorghum	cytosol	16.67	16.36
OQU86641	Sorghum	nucleus	15.49	15.42

Protein Annotations

EnsemblPlants:KXG38574	EnsemblPlantsGene:SORBI_3001G253200	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR31150	PANTHER:PTHR31150:SF7	PFscan:PS50089	ProteinID:KXG38574	ProteinID:KXG38574.1
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0003C6B027	UniProt:A0A1B6QKY6	MapMan:35.2

Description

hypothetical protein

Coordinates

chr1:-:27539070..27548951

Molecular Weight (calculated)

46212.7 Da

IEP (calculated)

7.880

GRAVY (calculated)

-0.685

Length

426 amino acids

Sequence
(BLAST)

001: MGSLCCVAAR PHGASTASQD WSSISRSDPP WRTGAGFSPP LSRGWEYRIN SEGLSYGSHG DSGVAVNYGS SLSSNSKGAS RSWERNELPQ DHRYSTSEGA
101: ISYLNSPDVS FQNHHIMLPM LQDSSVDEYM RVSVAEPIGA LLLSEVMSGQ QNSGGSTSSR SDGSEYDIVP KSYTSTPRNF PSRRSFLSKP IHPVSFPEHA
201: PEAQETQSPV AIARSNNPLC SEFNGTGELR FPGPMDYGSG SHGESGNWSA ASSMDLTDLS ERPEAGQAGP LRPNNVMQKT RCDLCEKLLT KRSPWGSRRI
301: VRTGDLPVAG VLPCSHVYHA ECLERTTPKG QKHDPPCPVC DKLAGKDTEQ WSICRLKNGF PRLRSLGEGP SRVWSCAHAG DCVAGAVQIP RSNSIKLLSR
401: SGHKRHASSK GEPSKDWAET SKNDYM

Best Arabidopsis Sequence Match ( AT1G14180.1 )
(BLAST)

001: MGSLCCVAAK SDRSNSTSGD FSFGLHEPYW RTNTSFSPPS SRWDVHGLMD GISCYGSSTS SNANVLRSPD LSQALHWTPN DFESATRRDQ IVKQLPGTSR
101: NVGIGDSEPG RNSSSRRFFL SKPVHPILHP SDNVRDTASD SADACSWSSG TPSSIDSVDV PEPVLDWNNN STKAQQVAAS STFKCGLCNR YLSQKSPWGS
201: RSIVRNRDMP VTGVLSCQHV FHVECLDQST PKIQRNDPLC PICTKQEGEH FKSNNIVPRL KPLYEDGPSS RPWGCAQAGD CVESAVNVPP KNTMMMINRN
301: RIRKSLSLRG NSSKDFSRKM KRSNSVAMEN LANQVSLVHS RGKEKVSW

Arabidopsis Description

Putative mandelonitrile lyase [Source:UniProtKB/TrEMBL;Acc:Q8GXX6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.