Factsheet for Bra026851.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33767	Canola	nucleus, plastid	100.0	100.0
CDX81616	Canola	nucleus, plastid	93.65	87.8
AT1G14180.1	Thale cress	nucleus	68.89	62.36
Bra019673.1-P	Field mustard	nucleus, plastid	58.1	53.98
Solyc05g007820.2.1	Tomato	nucleus	27.3	33.86
KRH74897	Soybean	nucleus	38.41	32.61
KRH70752	Soybean	nucleus	40.95	31.16
PGSC0003DMT400047431	Potato	nucleus, plastid	38.41	29.88
Os10t0406200-01	Rice	nucleus	30.48	22.17
KXG38574	Sorghum	plastid	29.84	22.07
GSMUA_Achr3P01890_001	Banana	nucleus	35.56	21.5
Bra008196.1-P	Field mustard	cytosol	14.29	18.91
Bra003754.1-P	Field mustard	nucleus, plastid	11.43	17.39
Bra031193.1-P	Field mustard	nucleus	22.22	16.99
Bra002147.1-P	Field mustard	nucleus	19.37	15.89
Bra011873.1-P	Field mustard	nucleus	21.59	15.7
Bra033599.1-P	Field mustard	nucleus	19.37	15.37
Bra010702.1-P	Field mustard	nucleus	19.37	14.77
Zm00001d014199_P003	Maize	plastid	30.16	14.5
Bra015846.1-P	Field mustard	nucleus	19.37	12.32

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	EnsemblPlantsGene:Bra026851	EnsemblPlants:Bra026851.1	EnsemblPlants:Bra026851.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	InterPro:IPR001841	InterPro:IPR013083	UniProt:M4EDJ1	PFAM:PF00097
PFscan:PS50089	PANTHER:PTHR31150	PANTHER:PTHR31150:SF7	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002542E11
InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	:	:	:

Description

AT1G14180 (E=4e-104) | protein binding / zinc ion binding

Coordinates

chrA09:-:33981883..33982892

Molecular Weight (calculated)

34739.5 Da

IEP (calculated)

8.960

GRAVY (calculated)

-0.739

Length

315 amino acids

Sequence
(BLAST)

001: MGSLCCVAAK SDRSNSPSHD FSFGPHEPYW RTNSSFSPPS SRWDLHGLTD GVSFYGSSTS SNANVLRSPD LSQTRHWTPS DFESATRRDQ TPKRFFLSKP
101: VHPILHPSDN AREITSDSAD ACSWSSGTPS SIDSTDVPEP LLDAQRVVAS STFKCGLCNR YISQKSPWGS RSIMRNRDMP VTGVLPCQHV FHAECLDQST
201: PKTHGNDPPC PVCTKQEGEH SNKSHNIGLR LKPLCEDGTS TRQWGCAQVG DCVESAVNVP PRNTMLMINR NRIRKNLSLR GNSSKDSPRK IKKSNSFALE
301: NQVSLVHSRG KQKAA

Best Arabidopsis Sequence Match ( AT1G14180.1 )
(BLAST)

001: MGSLCCVAAK SDRSNSTSGD FSFGLHEPYW RTNTSFSPPS SRWDVHGLMD GISCYGSSTS SNANVLRSPD LSQALHWTPN DFESATRRDQ IVKQLPGTSR
101: NVGIGDSEPG RNSSSRRFFL SKPVHPILHP SDNVRDTASD SADACSWSSG TPSSIDSVDV PEPVLDWNNN STKAQQVAAS STFKCGLCNR YLSQKSPWGS
201: RSIVRNRDMP VTGVLSCQHV FHVECLDQST PKIQRNDPLC PICTKQEGEH FKSNNIVPRL KPLYEDGPSS RPWGCAQAGD CVESAVNVPP KNTMMMINRN
301: RIRKSLSLRG NSSKDFSRKM KRSNSVAMEN LANQVSLVHS RGKEKVSW

Arabidopsis Description

Putative mandelonitrile lyase [Source:UniProtKB/TrEMBL;Acc:Q8GXX6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.