Factsheet for GSMUA_Achr3P01890_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74897	Soybean	nucleus	31.29	43.94
PGSC0003DMT400047431	Potato	nucleus, plastid	32.82	42.22
KXG38574	Sorghum	plastid	33.59	41.08
Solyc05g007820.2.1	Tomato	nucleus	19.58	40.16
KRH70752	Soybean	nucleus	31.48	39.61
Os10t0406200-01	Rice	nucleus	32.44	39.03
Bra026851.1-P	Field mustard	nucleus, plastid	21.5	35.56
CDY33767	Canola	nucleus, plastid	21.5	35.56
AT1G14180.1	Thale cress	nucleus	22.84	34.2
CDX81616	Canola	nucleus, plastid	21.31	33.04
Bra019673.1-P	Field mustard	nucleus, plastid	20.92	32.15
CDY49106	Canola	plastid	20.54	31.56
Zm00001d014199_P003	Maize	plastid	33.4	26.56
GSMUA_Achr4P24550_001	Banana	nucleus	15.36	18.78
GSMUA_Achr5P27760_001	Banana	nucleus	21.5	17.78
GSMUA_Achr6P08950_001	Banana	nucleus	12.86	15.91
GSMUA_Achr10P...	Banana	nucleus	12.28	13.91

Protein Annotations

EnsemblPlants:GSMUA_Achr3P01890_001	EnsemblPlants:GSMUA_Achr3T01890_001	EnsemblPlantsGene:GSMUA_Achr3G01890_001	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR31150	PANTHER:PTHR31150:SF7	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00029692DF	UniProt:M0SB07	MapMan:35.2	:

Description

mandelonitrile lyase, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G01890_001]

Coordinates

chr3:-:1259962..1268617

Molecular Weight (calculated)

56671.6 Da

IEP (calculated)

9.138

GRAVY (calculated)

-0.467

Length

521 amino acids

Sequence
(BLAST)

001: MKLAVISVDD RSFPSTPQQV KTDPIRGGER KARVIFIRVF LGFPSTPPPV RPCFCGFHGA HSLVAPFCPP ITLIGGKAAK ENFDSRGILK LIAKIGSLCC
101: VAARPHGSST TSREWSVGRN EPFWLTNSSI SPPLSTRWDY RFHSEGLSFG SQGDGGVGRY VSSRSSNSKS SRSWGRGDSP GNHQFSASDG AISYISSPSD
201: SFQNHQLTPA PTQGANVEEF VGDPASGPLI SSLVEGTLGF SSFNGSISSR SDGSEYDPIS KSHSSARRSF SNHRFFMSKP IHPVSFPDHI TGIEEQNHTL
301: HSLWFSEIGA NLPRESVRWS STGSVDFTGI SEQLEPEVGY PYNAVPEVSK CGLCERLLSQ RSPWGSRRIV RSGDMPVVSV LSCGHVYHAE CLERVTPKTY
401: KHDPPCPLCT KPDKNVPDQW AVCLARNRIP RLRSPRGEGP SSMWSCTQVG DCVEGALHTP NQSKMILSSR NRLKRQLSLK GNSAKERAEN LKKSGLCPSN
501: GFQGGIRVGQ GTSWCSSSSD I

Best Arabidopsis Sequence Match ( AT1G14180.1 )
(BLAST)

001: MGSLCCVAAK SDRSNSTSGD FSFGLHEPYW RTNTSFSPPS SRWDVHGLMD GISCYGSSTS SNANVLRSPD LSQALHWTPN DFESATRRDQ IVKQLPGTSR
101: NVGIGDSEPG RNSSSRRFFL SKPVHPILHP SDNVRDTASD SADACSWSSG TPSSIDSVDV PEPVLDWNNN STKAQQVAAS STFKCGLCNR YLSQKSPWGS
201: RSIVRNRDMP VTGVLSCQHV FHVECLDQST PKIQRNDPLC PICTKQEGEH FKSNNIVPRL KPLYEDGPSS RPWGCAQAGD CVESAVNVPP KNTMMMINRN
301: RIRKSLSLRG NSSKDFSRKM KRSNSVAMEN LANQVSLVHS RGKEKVSW

Arabidopsis Description

Putative mandelonitrile lyase [Source:UniProtKB/TrEMBL;Acc:Q8GXX6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.