Factsheet for Bra019673.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49106	Canola	plastid	94.1	94.1
Bra026851.1-P	Field mustard	nucleus, plastid	53.98	58.1
Solyc05g007820.2.1	Tomato	nucleus	26.25	35.04
KRH74897	Soybean	nucleus	32.45	29.65
PGSC0003DMT400047431	Potato	nucleus, plastid	34.81	29.14
KRH70752	Soybean	nucleus	33.92	27.78
Os10t0406200-01	Rice	nucleus	28.32	22.17
KXG38574	Sorghum	plastid	27.43	21.83
Bra008196.1-P	Field mustard	cytosol	15.04	21.43
GSMUA_Achr3P01890_001	Banana	nucleus	32.15	20.92
Bra031193.1-P	Field mustard	nucleus	22.12	18.2
Bra003754.1-P	Field mustard	nucleus, plastid	10.91	17.87
Bra002147.1-P	Field mustard	nucleus	19.17	16.93
Bra010702.1-P	Field mustard	nucleus	18.88	15.5
Bra011873.1-P	Field mustard	nucleus	19.76	15.47
Bra033599.1-P	Field mustard	nucleus	17.99	15.37
Zm00001d014199_P003	Maize	plastid	27.43	14.2
Bra015846.1-P	Field mustard	nucleus	18.88	12.93

Protein Annotations

EnsemblPlants:Bra019673.1	EnsemblPlants:Bra019673.1-P	EnsemblPlantsGene:Bra019673	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR31150	PANTHER:PTHR31150:SF7	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000253E6BA	UniProt:M4DT30	MapMan:35.2	:

Description

AT1G14180 (E=8e-125) | protein binding / zinc ion binding

Coordinates

chrA06:+:5079603..5080700

Molecular Weight (calculated)

37298.4 Da

IEP (calculated)

8.897

GRAVY (calculated)

-0.696

Length

339 amino acids

Sequence
(BLAST)

001: MGSLCCVAAK SDKSDSSASR DVSFGAHEPY WRTNTSFSPP SSRWDVPGLT DGISLYGSSS STSSNANLLP TPNLSQTLHW NDFESATRRD QALKQLPSCS
101: DIGDSEPNRN FSNRRFFLSK PVHPIHSGNA RGTTSDSADA CSWSSGRTSS IDSMDVVLAW DNHNSTKAQR AASSTFVCGL CNRYISQKPP CGSRSIVRNQ
201: DMPVTGVLPC QHVFHAECLD QSTPKAHRND PPCPVCTKQE GEQDKSHNVV FRLKPFCEDG PSSTRQWACA QVGDCVESAV NVPPRNTMIM INRNRMRKSL
301: SLRGSSSKDS PRKVKRRGSF MENFTNQVSF VHSRGKEKV

Best Arabidopsis Sequence Match ( AT1G14180.1 )
(BLAST)

001: MGSLCCVAAK SDRSNSTSGD FSFGLHEPYW RTNTSFSPPS SRWDVHGLMD GISCYGSSTS SNANVLRSPD LSQALHWTPN DFESATRRDQ IVKQLPGTSR
101: NVGIGDSEPG RNSSSRRFFL SKPVHPILHP SDNVRDTASD SADACSWSSG TPSSIDSVDV PEPVLDWNNN STKAQQVAAS STFKCGLCNR YLSQKSPWGS
201: RSIVRNRDMP VTGVLSCQHV FHVECLDQST PKIQRNDPLC PICTKQEGEH FKSNNIVPRL KPLYEDGPSS RPWGCAQAGD CVESAVNVPP KNTMMMINRN
301: RIRKSLSLRG NSSKDFSRKM KRSNSVAMEN LANQVSLVHS RGKEKVSW

Arabidopsis Description

Putative mandelonitrile lyase [Source:UniProtKB/TrEMBL;Acc:Q8GXX6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.