Factsheet for Bra031193.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
peroxisome 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13812	Canola	cytosol, nucleus, peroxisome	95.87	99.0
AT2G21500.2	Thale cress	nucleus	78.16	76.48
Bra011873.1-P	Field mustard	nucleus	64.32	61.2
Bra010702.1-P	Field mustard	nucleus	50.73	50.61
PGSC0003DMT400028504	Potato	cytosol, plastid	13.11	49.09
KRH60799	Soybean	nucleus, plastid	50.49	47.82
KRH51493	Soybean	nucleus	49.76	47.13
VIT_03s0038g04400.t01	Wine grape	nucleus	51.94	47.03
Bra033599.1-P	Field mustard	nucleus	44.42	46.1
KRH27444	Soybean	nucleus, plastid	47.33	45.14
KRH20799	Soybean	nucleus	47.57	44.55
PGSC0003DMT400066093	Potato	nucleus	41.26	40.77
Solyc01g109910.2.1	Tomato	nucleus	44.9	40.22
PGSC0003DMT400089080	Potato	nucleus	43.45	40.04
Solyc10g054030.1.1	Tomato	nucleus	40.29	39.9
VIT_04s0079g00570.t01	Wine grape	cytosol	11.65	38.71
Bra003754.1-P	Field mustard	nucleus, plastid	17.48	34.78
EES00516	Sorghum	cytosol	33.98	32.26
GSMUA_Achr4P24550_001	Banana	nucleus	33.01	31.92
VIT_04s0079g00560.t01	Wine grape	cytosol	11.89	31.61
GSMUA_Achr6P08950_001	Banana	nucleus	32.28	31.59
Os01t0261100-01	Rice	cytosol	32.77	31.32
Bra015846.1-P	Field mustard	nucleus	37.38	31.11
Zm00001d008306_P012	Maize	cytosol	33.25	30.93
HORVU3Hr1G036310.2	Barley	plastid	31.55	30.3
TraesCS3D01G183800.1	Wheat	plastid	31.31	30.14
TraesCS3A01G176600.1	Wheat	plastid	31.31	30.07
TraesCS3B01G208200.1	Wheat	plastid	30.83	29.6
Bra008196.1-P	Field mustard	cytosol	16.99	29.41
HORVU3Hr1G036290.3	Barley	cytosol	29.37	28.21
TraesCS3A01G176900.1	Wheat	cytosol	28.88	27.8
TraesCS3B01G208100.1	Wheat	cytosol	28.88	27.8
TraesCS3D01G183700.1	Wheat	cytosol	28.64	27.63
OQU86641	Sorghum	nucleus	27.91	26.87
Zm00001d040317_P005	Maize	cytosol	28.64	25.76
GSMUA_Achr10P...	Banana	nucleus	26.21	23.48
Bra026851.1-P	Field mustard	nucleus, plastid	16.99	22.22
Bra019673.1-P	Field mustard	nucleus, plastid	18.2	22.12
Bra002147.1-P	Field mustard	nucleus	14.81	15.89

Protein Annotations

EnsemblPlants:Bra031193.1	EnsemblPlants:Bra031193.1-P	EnsemblPlantsGene:Bra031193	Gene3D:3.30.40.10	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0016020	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
PANTHER:PTHR31150	PANTHER:PTHR31150:SF2	PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI0002542FD8	UniProt:M4EQX0	MapMan:35.2	:	:	:

Description

AT2G21500 (E=1e-144) | protein binding / zinc ion binding

Coordinates

chrA09:+:32063601..32065177

Molecular Weight (calculated)

45011.5 Da

IEP (calculated)

9.601

GRAVY (calculated)

-0.667

Length

412 amino acids

Sequence
(BLAST)

001: MGNACCVAAH DKMVLPNTSA VEGLQRNNAR YSPNWSFRWD NRGRVAGEDT SLSWLSDGIS RNDGSDLKSE SAFVSSQGSP LNHLQTQSWQ KSPASDQSFS
101: RNASMDTVSE QITQNHVKRS VSLASQPSSF STSPLSSHSH LPLPPATSSS TLKLTPRTRL SKQVSDSQIL GFNSPTEERL GSESHSGPSD GWSMQAFSEM
201: MAYSRRESCS YDNECLSGLG RGKIDHQGNG KSSDQQTCGA CSRPLSQKSL LSSQKIFATN ELSVAAILAC GHVYHSECLE QMTPEADKFD PQCPVCTLGE
301: KRTFKLSEKA LRADLDLRAK QNKMLRKHVV DRDDFVMFDH MPNAAAAAAS GSGGHKGKVS KLLTSSSLRS YSPKPFLARH FSFGSRSNSV KSPKENHSAR
401: KKGFFWTKSS KL

Best Arabidopsis Sequence Match ( AT2G21500.1 )
(BLAST)

001: MGNACCVATR DKMVVPNTSA VENFQRNNVR YSPNWSFRWD NRGGRVAGEE TSVSLLSDRI SRNDVSDVKS ETALVSSQGS PLDNFQTQSW QKSPASDQSF
101: SRIASIDSVS EQITQKTNDS TDPTYYPSPA KLSLSLASQP SSFSVSPLSS QSHLPMPPAS SSQLKLTPPP RLSKQVSYGQ IFGFTSPSRS SATEERLGNE
201: SQSDGWSMQA FSEMMAYSRR ESCSYDNECF GLRRDKIDNL GSRKSNDQQN CGACSRSLSE KSLLSSQKIF ATNELSVAAI LACGHVYHSE CLEQMTPEID
301: KFDPSCPICT LGEKKTFKLS EKALKADLEM KARHNKRLRN RVVDSDEFVK FNNNHEAAVG YKGKTPKLIS SSSLRSYSPK PFLARHFSFG SRSNSVKSPK
401: EIHSPSSLRK KGFFWTKSSK I

Arabidopsis Description

At2g21560 [Source:UniProtKB/TrEMBL;Acc:Q8RWF9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.