Factsheet for GSMUA_Achr4P24550_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P09630_001
GSMUA_Achr2P17520_001
GSMUA_Achr4P21110_001
GSMUA_Achr4P28510_001
GSMUA_Achr7P16760_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19680.1	GSMUA_Achr10P...	AT3G27960.1	21798944
AT1G19680.1	GSMUA_Achr2P09630_001	AT3G27960.1	21798944
AT1G75400.1	GSMUA_Achr2P17520_001	AT3G22960.1	21798944
AT1G75400.1	GSMUA_Achr4P21110_001	AT3G22960.1	21798944
AT1G75400.1	GSMUA_Achr4P28510_001	AT3G22960.1	21798944
AT1G75400.1	GSMUA_Achr7P16760_001	AT3G22960.1	21798944
AT1G75400.1	GSMUA_Achr11P...	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P08950_001	Banana	nucleus	50.7	51.31
Os01t0261100-01	Rice	cytosol	51.41	50.81
HORVU3Hr1G036310.2	Barley	plastid	50.47	50.12
TraesCS3B01G208200.1	Wheat	plastid	50.23	49.88
TraesCS3A01G176600.1	Wheat	plastid	49.77	49.42
TraesCS3D01G183800.1	Wheat	plastid	49.53	49.3
EES00516	Sorghum	cytosol	49.3	48.39
TraesCS3B01G208100.1	Wheat	cytosol	46.95	46.73
TraesCS3A01G176900.1	Wheat	cytosol	46.95	46.73
TraesCS3D01G183700.1	Wheat	cytosol	46.48	46.37
Zm00001d008306_P012	Maize	cytosol	48.12	46.28
HORVU3Hr1G036290.3	Barley	cytosol	46.24	45.92
OQU86641	Sorghum	nucleus	44.84	44.63
Zm00001d040317_P005	Maize	cytosol	44.37	41.27
VIT_18s0001g13060.t01	Wine grape	nucleus	40.14	38.6
VIT_03s0038g04400.t01	Wine grape	nucleus	40.85	38.24
KRH15146	Soybean	nucleus	37.56	36.87
KRH05863	Soybean	nucleus	37.56	36.87
KRH60799	Soybean	nucleus, plastid	37.56	36.78
KRH51493	Soybean	nucleus	37.32	36.55
VIT_04s0079g00570.t01	Wine grape	cytosol	10.56	36.29
KRH61121	Soybean	plastid	37.56	36.12
KRH51797	Soybean	nucleus	36.38	35.88
GSMUA_Achr10P...	Banana	nucleus	37.32	34.57
KRH20799	Soybean	nucleus	35.68	34.55
CDY13812	Canola	cytosol, nucleus, peroxisome	31.92	34.09
Solyc10g054030.1.1	Tomato	nucleus	32.86	33.65
PGSC0003DMT400066093	Potato	nucleus	32.86	33.57
KRH27444	Soybean	nucleus, plastid	34.04	33.56
PGSC0003DMT400089080	Potato	nucleus	34.98	33.33
Solyc01g109910.2.1	Tomato	nucleus	35.68	33.04
Bra031193.1-P	Field mustard	nucleus	31.92	33.01
PGSC0003DMT400028504	Potato	cytosol, plastid	8.45	32.73
AT2G21500.2	Thale cress	nucleus	31.46	31.83
CDX82036	Canola	nucleus	30.05	31.68
CDY41965	Canola	nucleus	30.52	30.73
Bra003754.1-P	Field mustard	nucleus, plastid	14.79	30.43
CDX68130	Canola	nucleus, plastid	14.79	30.43
AT1G75400.1	Thale cress	plastid	31.92	29.89
AT4G39140.3	Thale cress	nucleus	30.05	29.84
CDY47525	Canola	nucleus, plastid	32.39	29.81
Bra011873.1-P	Field mustard	nucleus	30.28	29.79
CDY42611	Canola	nucleus	29.34	29.76
CDY69665	Canola	nucleus, plastid	32.39	29.74
CDY12123	Canola	nucleus	29.11	29.38
CDY39030	Canola	nucleus, plastid	14.55	28.97
AT1G19680.1	Thale cress	nucleus	30.05	28.83
CDY56767	Canola	cytosol, nucleus, peroxisome, plastid	26.76	28.5
Bra015846.1-P	Field mustard	nucleus	32.63	28.08
CDX90314	Canola	nucleus	27.0	27.78
Bra010702.1-P	Field mustard	nucleus	26.76	27.6
VIT_04s0079g00560.t01	Wine grape	cytosol	9.86	27.1
CDX72716	Canola	nucleus	24.41	26.67
Bra033599.1-P	Field mustard	nucleus	23.94	25.69
Bra008196.1-P	Field mustard	cytosol	14.08	25.21
GSMUA_Achr3P01890_001	Banana	nucleus	18.78	15.36
GSMUA_Achr5P27760_001	Banana	nucleus	19.48	13.17

Protein Annotations

EnsemblPlants:GSMUA_Achr4P24550_001	EnsemblPlants:GSMUA_Achr4T24550_001	EnsemblPlantsGene:GSMUA_Achr4G24550_001	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR31150	PANTHER:PTHR31150:SF18	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000294AA19	UniProt:M0SRR6	MapMan:35.2	:

Description

zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G24550_001]

Coordinates

chr4:+:24304222..24308854

Molecular Weight (calculated)

46824.5 Da

IEP (calculated)

9.058

GRAVY (calculated)

-0.684

Length

426 amino acids

Sequence
(BLAST)

001: MGANCCVAAK DKLVPDTSLS TCRNVRHSPS WSFRRDNRTH IEDIMDNPTS LSHISSGDAS FKTKVGVASE TGLLDGSSPL KNFQAQQWHK SPFKTRSSRK
101: SRDNGSGQSI GSDISLEFKG WTKSSCVGCT SYDRPTGFVP STSSVSKEDP SSSWSHSLPS DPTSSRKAQS SPGYQLSRMI SDSRIPSLNS LNENSFPEGR
201: QSFGLSVCSN DLPMGGSHGS SSDGWSMCMF SDLASSQRER WSYDSENLST INSKIGKLIP EQPRPVSLNQ QKCKICLKLL QKKSPWSSHK VVSSNELSVV
301: AVLFCGHAYH AECLDNLTPE TDRHDPPCPV CIYGEKSITK LFGKAQSSGR SNGSRIVVAD TDMAGDTFSE WWRAGKGHRM GASSSLKNSF SKPFRQHLSI
401: EMPLSPTVSE NESTRKKGYW ARYWKD

Best Arabidopsis Sequence Match ( AT1G75400.1 )
(BLAST)

001: MGSVCCVAVK DRKVPPSGGP ASSSVHRNSA CSPQWSFRRD NRRRVADEIE GSPYYSPYVA SRGISMDKMS LGSERGTLSE GGTPPDGHLG TPASQKSATP
101: EMSTNSMVPP SSGSSLASSD LIEVKNLVDS PGIVPSAQSK PLFSTPSLPN PVSDLSSAHT RLLPPKSTPS RRARRSPGHQ LFRQVSDSQI LGLKSPINNY
201: SISEGRSSFV LSTCSNDFAT GSQYASSEGG WSMNTFSELV AYSQRDRWSF DSEHLGSGRR KLSGGSSRFS FSPSVVDQQV CGACSKLLTE RSSIATFELP
301: IAAVLACGHV YHAECLETMT TDIEKYDPAC PICTIGEKRV AKITRKALKA EAEAKAKQYK RCKNRVVDSY GESECDEFVF QKMGKREGKA LKLEASCSSK
401: SSSNKSFLKW HFASISSKWN KPSSKDSALK KGFWSRHRNN RSSSSIEGLN QTSPL

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8L7K7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.