CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92440
KRG93305
KRG95394
KRH16959
KRH24006
KRH27971
KRH29310
KRH34357
KRH53667
KRH56614
KRH64261
KRH67075
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19680.1	KRG93305	AT3G27960.1	21798944
AT1G19680.1	KRH56614	AT3G27960.1	21798944
AT1G19680.1	KRG95394	AT5G22355.1	21798944
AT1G19680.1	KRH67075	AT5G22355.1	21798944
AT1G75400.1	KRG92440	AT3G22960.1	21798944
AT1G75400.1	KRH34357	AT3G22960.1	21798944
AT1G75400.1	KRH24006	AT3G48150.1	21798944
AT1G75400.1	KRH27971	AT3G48150.1	21798944
AT1G75400.1	KRH29310	AT3G48150.1	21798944
AT1G75400.1	KRH77487	AT3G48150.1	21798944
AT1G75400.1	KRH16959	AT3G49580.1	21798944
AT1G75400.1	KRH53667	AT3G49580.1	21798944
AT1G75400.1	KRH64261	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15146	Soybean	nucleus	95.85	95.85
KRH51797	Soybean	nucleus	79.03	79.4
KRH61121	Soybean	plastid	80.41	78.78
VIT_18s0001g13060.t01	Wine grape	nucleus	71.2	69.75
AT1G75400.1	Thale cress	plastid	51.84	49.45
CDY69665	Canola	nucleus, plastid	51.38	48.06
CDY47525	Canola	nucleus, plastid	51.15	47.95
KRH51493	Soybean	nucleus	47.23	47.13
KRH60799	Soybean	nucleus, plastid	47.0	46.9
Bra015846.1-P	Field mustard	nucleus	51.38	45.05
KRH27444	Soybean	nucleus, plastid	44.24	44.44
KRH20799	Soybean	nucleus	44.7	44.09
AT1G19680.1	Thale cress	nucleus	42.4	41.44
Bra003754.1-P	Field mustard	nucleus, plastid	19.59	41.06
CDX68130	Canola	nucleus, plastid	19.59	41.06
Os01t0261100-01	Rice	cytosol	40.09	40.37
GSMUA_Achr6P08950_001	Banana	nucleus	38.71	39.91
EES00516	Sorghum	cytosol	39.17	39.17
HORVU3Hr1G036290.3	Barley	cytosol	38.71	39.16
TraesCS3D01G183800.1	Wheat	plastid	38.25	38.78
TraesCS3B01G208200.1	Wheat	plastid	38.25	38.69
HORVU3Hr1G036310.2	Barley	plastid	38.02	38.46
Zm00001d008306_P012	Maize	cytosol	39.17	38.37
TraesCS3A01G176900.1	Wheat	cytosol	37.79	38.32
TraesCS3B01G208100.1	Wheat	cytosol	37.79	38.32
TraesCS3A01G176600.1	Wheat	plastid	37.79	38.23
TraesCS3D01G183700.1	Wheat	cytosol	37.33	37.94
GSMUA_Achr4P24550_001	Banana	nucleus	36.87	37.56
CDY39030	Canola	nucleus, plastid	18.43	37.38
OQU86641	Sorghum	nucleus	34.33	34.81
GSMUA_Achr10P...	Banana	nucleus	35.71	33.7
Bra008196.1-P	Field mustard	cytosol	18.43	33.61
Zm00001d040317_P005	Maize	cytosol	34.56	32.75
KRH20198	Soybean	nucleus	8.76	25.33
KRH03610	Soybean	plastid	6.68	23.77
KRH74897	Soybean	nucleus	15.67	18.33
KRH70752	Soybean	nucleus	17.28	18.12

Protein Annotations

EntrezGene:100800918	Gene3D:3.30.40.10	MapMan:35.2	EMBL:ACUP02010782	EnsemblPlantsGene:GLYMA_17G253300	InterPro:IPR001841
InterPro:IPR013083	UniProt:K7MNX6	EnsemblPlants:KRH05863	ProteinID:KRH05863	ProteinID:KRH05863.1	ProteinID:KRH05864.1
PFscan:PS50089	PANTHER:PTHR31150	PANTHER:PTHR31150:SF8	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000233E966
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:40743416..40747586

Molecular Weight (calculated)

47690.7 Da

IEP (calculated)

8.260

GRAVY (calculated)

-0.527

Length

434 amino acids

Sequence
(BLAST)

001: MGSACCVAAK DPNLPNRTGD ESLHRDVVCS PSWSFQWDSR GRVADEIENP SYHTSHVDSR NVSMELKGSL SSERGNLSDG GSILENSVTP ISLKSPVDEA
101: LVANLMTPSS DLSVSSNFST VVKNPAESSI PNLSFSIPSV FSTPTADPLP NHNYHHLPNS TPTRWAHRSP AHPLLRQISD SRIMGLKSPD NSISEGRPSF
201: VLSTCSNEMA AGSICGSSDG WSMRTFSELV ASSQRERWSF DSECFGSGRH KISGSSSRFS YSPSMELQSC GACSKLLTER STWSNQKFIA NSDLSVVAVL
301: VCGHSYHAEC LEAMTSEADR YDPACPICMV GDKNLSKLLS RKGLRAESEM KAKNHKISRN RVVDSYLDGG FDVFDRQKDI DLRGKVSKME PSCSARSSFG
401: KPFLRRHFSL GSKWSRSLSE NDSARKKGFW ARYR

Best Arabidopsis Sequence Match ( AT1G19680.1 )
(BLAST)

001: MGSVCCVAAK DRNVPSGAID NSVCSPSWSF RRDNRRRVAD EIKDSSNHNV GSRGIDIDKL SLGLERGPPS SETGGLATLG SQKSADSEMG TASMVTAPLA
101: GTSLAIRSPS DVSLASPVRV EVKNIVDSSD IVSSVLPNPS SSTSVSDLPS AHTHSLPPRS TPSRRARGSP GQQLFRQVSD SQTLGLKSPN NYSTSEGRSS
201: FVLSTCSNDT ATGSHFASSE GGWSINAFCE LVAQSQRERW SFDNEHLGSG RRRLSGCSSS RFSCSPSVDQ QTCGRCSKLL TERSPVARFD LPIPAVLACG
301: HVYHAACLET MTNETEKYDP TCPICTETQV TKLSRKALKA EAELKATSYK RCKNRVVDSY VRSECEDLMF QNLGKREGKG LKMDPSSNTK GSTSKSFMKW
401: HFGSVSTKWS KARDSTSKKS FWSRHSNKRL SHSFSSVEGL NQAT

Arabidopsis Description

At1g19680 [Source:UniProtKB/TrEMBL;Acc:Q9FXG6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.