CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
vacuole 1
mitochondrion 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92440
KRG93305
KRG95394
KRH16959
KRH24006
KRH27971
KRH29310
KRH34357
KRH53667
KRH56614
KRH64261
KRH67075
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G19680.1	KRG93305	AT3G27960.1	21798944
AT1G19680.1	KRH56614	AT3G27960.1	21798944
AT1G19680.1	KRG95394	AT5G22355.1	21798944
AT1G19680.1	KRH67075	AT5G22355.1	21798944
AT1G75400.1	KRG92440	AT3G22960.1	21798944
AT1G75400.1	KRH34357	AT3G22960.1	21798944
AT1G75400.1	KRH24006	AT3G48150.1	21798944
AT1G75400.1	KRH27971	AT3G48150.1	21798944
AT1G75400.1	KRH29310	AT3G48150.1	21798944
AT1G75400.1	KRH77487	AT3G48150.1	21798944
AT1G75400.1	KRH16959	AT3G49580.1	21798944
AT1G75400.1	KRH53667	AT3G49580.1	21798944
AT1G75400.1	KRH64261	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61121	Soybean	plastid	94.21	91.87
KRH05863	Soybean	nucleus	79.4	79.03
KRH15146	Soybean	nucleus	77.55	77.19
VIT_18s0001g13060.t01	Wine grape	nucleus	66.9	65.24
AT1G75400.1	Thale cress	plastid	50.69	48.13
KRH60799	Soybean	nucleus, plastid	47.22	46.9
CDY47525	Canola	nucleus, plastid	49.77	46.44
KRH51493	Soybean	nucleus	46.3	45.98
CDY69665	Canola	nucleus, plastid	49.07	45.69
KRH27444	Soybean	nucleus, plastid	45.14	45.14
KRH20799	Soybean	nucleus	45.83	45.0
Bra015846.1-P	Field mustard	nucleus	49.54	43.23
AT1G19680.1	Thale cress	nucleus	41.2	40.09
Os01t0261100-01	Rice	cytosol	39.58	39.68
CDX68130	Canola	nucleus, plastid	18.98	39.61
Bra003754.1-P	Field mustard	nucleus, plastid	18.98	39.61
EES00516	Sorghum	cytosol	38.89	38.71
HORVU3Hr1G036310.2	Barley	plastid	38.19	38.46
GSMUA_Achr6P08950_001	Banana	nucleus	37.27	38.24
TraesCS3D01G183800.1	Wheat	plastid	37.73	38.08
TraesCS3B01G208200.1	Wheat	plastid	37.73	38.0
HORVU3Hr1G036290.3	Barley	cytosol	37.5	37.76
TraesCS3A01G176600.1	Wheat	plastid	37.5	37.76
TraesCS3A01G176900.1	Wheat	cytosol	36.57	36.92
Zm00001d008306_P012	Maize	cytosol	37.73	36.79
TraesCS3B01G208100.1	Wheat	cytosol	36.34	36.68
TraesCS3D01G183700.1	Wheat	cytosol	36.11	36.53
CDY39030	Canola	nucleus, plastid	18.06	36.45
GSMUA_Achr4P24550_001	Banana	nucleus	35.88	36.38
Bra008196.1-P	Field mustard	cytosol	18.52	33.61
OQU86641	Sorghum	nucleus	32.41	32.71
Zm00001d040317_P005	Maize	cytosol	33.8	31.88
GSMUA_Achr10P...	Banana	nucleus	33.56	31.52
KRH20198	Soybean	nucleus	9.95	28.67
KRH03610	Soybean	plastid	6.94	24.59
KRH74897	Soybean	nucleus	14.81	17.25
KRH70752	Soybean	nucleus	16.2	16.91

Protein Annotations

EntrezGene:100808476	Gene3D:3.30.40.10	MapMan:35.2	EMBL:ACUP02003392	EnsemblPlantsGene:GLYMA_06G029500	InterPro:IPR001841
InterPro:IPR013083	UniProt:K7KSR9	EnsemblPlants:KRH51797	ProteinID:KRH51797	ProteinID:KRH51797.1	ProteinID:KRH51798.1
ProteinID:KRH51799.1	ProteinID:KRH51800.1	ProteinID:KRH51801.1	ProteinID:KRH51802.1	PFscan:PS50089	PANTHER:PTHR31150
PANTHER:PTHR31150:SF8	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002339A5A	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:2302206..2305904

Molecular Weight (calculated)

47614.6 Da

IEP (calculated)

8.256

GRAVY (calculated)

-0.541

Length

432 amino acids

Sequence
(BLAST)

001: MGSACCVAAK DHTIPSTSRT GGESLNRNAV CSPTWSFQWD SWGRVAGEIE DPSFHTSHRV SRNVSMELKG SLSSERGNLS DWGSTLDNSV TPMSLKSPVR
101: EHLVTSQMTP SLDLFMSSNC SAVVKNLIES PEIAESSIPS VFPTPMSDPM TNHNYHNLTN STPSRWAHRS PGHPLLRQIS DSRILGLKSP DTSISEGRPS
201: FVLSNCSNDM ATGSQCGSSD GWSMRTFSEM VASSQKERWS FDSEYTGSGR HKISGTSSRF SYSPSMDLQS CGACSKLLTD RSAWGSQKFI ASSDLSVVAV
301: LVCGHVYHAE CLETITPEAD SYDPACPICM VGEKYMSKLS KKGLWTESET KTKNYKISRN RVVDSYVDGG NDVFDRLKDI VSKMEPSSSS TRSSFGKPFL
401: RRHFSLGSKW SRSLLENDSA RKKGFWARCR RD

Best Arabidopsis Sequence Match ( AT1G19680.1 )
(BLAST)

001: MGSVCCVAAK DRNVPSGAID NSVCSPSWSF RRDNRRRVAD EIKDSSNHNV GSRGIDIDKL SLGLERGPPS SETGGLATLG SQKSADSEMG TASMVTAPLA
101: GTSLAIRSPS DVSLASPVRV EVKNIVDSSD IVSSVLPNPS SSTSVSDLPS AHTHSLPPRS TPSRRARGSP GQQLFRQVSD SQTLGLKSPN NYSTSEGRSS
201: FVLSTCSNDT ATGSHFASSE GGWSINAFCE LVAQSQRERW SFDNEHLGSG RRRLSGCSSS RFSCSPSVDQ QTCGRCSKLL TERSPVARFD LPIPAVLACG
301: HVYHAACLET MTNETEKYDP TCPICTETQV TKLSRKALKA EAELKATSYK RCKNRVVDSY VRSECEDLMF QNLGKREGKG LKMDPSSNTK GSTSKSFMKW
401: HFGSVSTKWS KARDSTSKKS FWSRHSNKRL SHSFSSVEGL NQAT

Arabidopsis Description

At1g19680 [Source:UniProtKB/TrEMBL;Acc:Q9FXG6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.