Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH27971 | Soybean | nucleus | 86.76 | 88.56 |
| KRH77487 | Soybean | nucleus | 86.08 | 87.72 |
| VIT_07s0130g00490.t01 | Wine grape | cytosol | 81.15 | 82.84 |
| VIT_07s0031g02330.t01 | Wine grape | cytosol | 78.95 | 80.59 |
| Solyc03g113740.2.1 | Tomato | cytosol, mitochondrion | 75.55 | 77.26 |
| PGSC0003DMT400063189 | Potato | cytosol | 71.14 | 77.02 |
| Bra033769.1-P | Field mustard | nucleus | 72.84 | 74.22 |
| Bra018081.1-P | Field mustard | cytosol | 72.16 | 73.4 |
| AT3G48150.1 | Thale cress | cytosol | 71.99 | 73.23 |
| CDY58070 | Canola | cytosol | 61.29 | 72.93 |
| CDY70805 | Canola | nucleus | 37.18 | 72.76 |
| KRH29310 | Soybean | cytosol | 38.37 | 70.62 |
| CDY36901 | Canola | cytosol | 59.76 | 70.26 |
| CDY44976 | Canola | cytosol | 59.76 | 69.7 |
| CDY58069 | Canola | nucleus | 49.92 | 65.92 |
| GSMUA_Achr11P... | Banana | cytosol | 66.89 | 65.23 |
| Os02t0656300-01 | Rice | cytosol | 65.03 | 64.15 |
| TraesCS6B01G273900.1 | Wheat | cytosol | 64.69 | 63.61 |
| TraesCS6A01G251400.1 | Wheat | cytosol | 64.69 | 63.61 |
| TraesCS6D01G233200.1 | Wheat | cytosol | 64.52 | 63.44 |
| EES07517 | Sorghum | cytosol | 64.18 | 63.0 |
| Zm00001d017475_P002 | Maize | cytosol | 63.16 | 62.1 |
| HORVU6Hr1G062870.1 | Barley | cytosol, plastid | 64.35 | 58.4 |
| HORVU0Hr1G027080.4 | Barley | plastid | 59.25 | 58.17 |
| Os06t0679100-00 | Rice | plastid | 14.77 | 48.88 |
| KRH18292 | Soybean | nucleus | 16.13 | 12.55 |
| KRG93804 | Soybean | cytosol | 16.13 | 12.55 |
| KRH01476 | Soybean | cytosol | 15.62 | 12.17 |
| KRH41728 | Soybean | extracellular, vacuole | 0.68 | 8.51 |
Protein Annotations
| Gene3D:1.25.40.10 | EntrezGene:100783872 | MapMan:13.3.4.1.1.2.4 | EMBL:ACUP02007166 | InterPro:APC8 | ncoils:Coil |
| EnsemblPlantsGene:GLYMA_12G016100 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005680 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0030071 | UniProt:I1LP56 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 |
| EnsemblPlants:KRH24006 | ProteinID:KRH24006 | ProteinID:KRH24006.1 | PFAM:PF04049 | PFAM:PF13176 | PFAM:PF13181 |
| PFAM:PF13414 | PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR12558 | PANTHER:PTHR12558:SF10 | SMART:SM00028 |
| SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat | UniParc:UPI000296E592 | : |
Description
hypothetical protein
Coordinates
chr12:-:1144398..1148496
Molecular Weight (calculated)
68588.4 Da
IEP (calculated)
5.939
GRAVY (calculated)
-0.509
Length
589 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDWREQLEA KAMSSKDSCR SELRIAIRQL GDRCLYSASK WAAEQLVGIE ADNAKFTPSN TRFHRGSSSI RRKYRTHETA VTPVVGVSYD ATPVLEEDEL
101: VDGDFYLLAK SYFDCREYKR AAHVLRDQMG RKSVFLRCYA LYLAGEKRKD EETIELEGPL GKSDAINHEL VSLERELSTL HKNGQADPFC LYLYGLVLKQ
201: KGNESLARVV LVESVNSYPW NWNAWTELQS LCKKVDTLNS LNLNSHWMKD FFLASVYQEL RMYNDSLSKY EYLLGTFGYS NYIQAQIAKA QYSLREFDQV
301: EAIFEELLKN DPYRVEDMDM YSNVLYAKEC SASLSYLAHR VFMTDKYKPE SCCIIGNYYS LKGQHEKSVV YFRRALKLDK NYLTAWTLMG HEFVEMKNTP
401: AAVDAYRRAV DIDSCDYRAW YGLGQAYEMM GMPFYALHYF KKSVLLQQND SRLWIAMAQC YETDQLRMLD DAIKCYKRAV NCNDREAIAL HQLAKLHSEL
501: GHTEEAAFYY KKDLERMESE DREEPTMIEA LLYLAKYYRE QQKFEEADVY CTRLVDYTGP ERETAKSLLR GMQLTQSSFP SMDVEHFPP
101: VDGDFYLLAK SYFDCREYKR AAHVLRDQMG RKSVFLRCYA LYLAGEKRKD EETIELEGPL GKSDAINHEL VSLERELSTL HKNGQADPFC LYLYGLVLKQ
201: KGNESLARVV LVESVNSYPW NWNAWTELQS LCKKVDTLNS LNLNSHWMKD FFLASVYQEL RMYNDSLSKY EYLLGTFGYS NYIQAQIAKA QYSLREFDQV
301: EAIFEELLKN DPYRVEDMDM YSNVLYAKEC SASLSYLAHR VFMTDKYKPE SCCIIGNYYS LKGQHEKSVV YFRRALKLDK NYLTAWTLMG HEFVEMKNTP
401: AAVDAYRRAV DIDSCDYRAW YGLGQAYEMM GMPFYALHYF KKSVLLQQND SRLWIAMAQC YETDQLRMLD DAIKCYKRAV NCNDREAIAL HQLAKLHSEL
501: GHTEEAAFYY KKDLERMESE DREEPTMIEA LLYLAKYYRE QQKFEEADVY CTRLVDYTGP ERETAKSLLR GMQLTQSSFP SMDVEHFPP
001: MVSKECCRNE IRAAIRQLSD RCLYSAAKWA GEQLVGIEQD PSNFTPANTR FQRGSSSIRR RFSTNESIST PLPSVGFSQA ATPLPEEDEA IDGDIYLLAK
101: SYFDCREYRR ASHMLRDQVS KKSLFLRYYA LYLAGEKRKE EEMIELEGPL GKSDAINREL VSLERDLSAL RRTGAIDSFG LYLYGVVLKE KGNESLARAS
201: LVESVNSYPW NWSAWSELQS LCTSIEILNS LNLNNHWMKE FFLGNAYQEL RMHTESLAKY EYLQGIFSFS NYIQAQTAKA QYSLREFDQV EIMFEELLRN
301: DPYRVEDMDL YSNVLYAKEA CAALSYLAHK VFLTDKYRPE SCCIIGNYYS LKGQHEKAVM YFRRALKLNK KYLSAWTLMG HEYVEMKNTP AAIDAYRRAV
401: DINPTDYRAW YGLGQAYEMM GMPFYALHYF RKSIFFLPND SRLWIAMAKC YQTEQLYMLE EAIKCYKRAV NCTDTEGIAL NQLAKLHQKL GRNEEAAYYF
501: EKDLERMDAE GLEGPNMFEA LVFLATHFKN HKKFEEAEVY CTRLLDYSGP EKEKAKSLLR GIRMAQTGFP SMDLEHFPI
101: SYFDCREYRR ASHMLRDQVS KKSLFLRYYA LYLAGEKRKE EEMIELEGPL GKSDAINREL VSLERDLSAL RRTGAIDSFG LYLYGVVLKE KGNESLARAS
201: LVESVNSYPW NWSAWSELQS LCTSIEILNS LNLNNHWMKE FFLGNAYQEL RMHTESLAKY EYLQGIFSFS NYIQAQTAKA QYSLREFDQV EIMFEELLRN
301: DPYRVEDMDL YSNVLYAKEA CAALSYLAHK VFLTDKYRPE SCCIIGNYYS LKGQHEKAVM YFRRALKLNK KYLSAWTLMG HEYVEMKNTP AAIDAYRRAV
401: DINPTDYRAW YGLGQAYEMM GMPFYALHYF RKSIFFLPND SRLWIAMAKC YQTEQLYMLE EAIKCYKRAV NCTDTEGIAL NQLAKLHQKL GRNEEAAYYF
501: EKDLERMDAE GLEGPNMFEA LVFLATHFKN HKKFEEAEVY CTRLLDYSGP EKEKAKSLLR GIRMAQTGFP SMDLEHFPI
Arabidopsis Description
APC8Anaphase-promoting complex subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9STS3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.