CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94592
KRG95394
KRG96343
KRG97773
KRG98830
KRH01571
KRH05373
KRH06898
KRH15645
KRH16959
KRH22128
KRH22725
KRH24392
KRH25168
KRH26581
KRH27215
KRH29374
KRH30513
KRH31112
KRH38026
KRH39044
KRH39174
KRH41647
KRH46114
KRH48495
KRH51475
KRH53667
KRH54704
KRH60345
KRH60786
KRH63230
KRH64261
KRH67075
KRH68078
KRH70543
KRH71796

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16560.1	KRG97773	AT1G07310.1	21798944
AT5G16560.1	KRH31112	AT1G07310.1	21798944
AT5G16560.1	KRH05373	AT1G18400.1	21798944
AT5G16560.1	KRH15645	AT1G18400.1	21798944
AT5G16560.1	KRH39174	AT1G18400.1	21798944
AT5G16560.1	KRH41647	AT1G18400.1	21798944
AT5G16560.1	KRH48495	AT1G18400.1	21798944
AT5G16560.1	KRH60345	AT1G18400.1	21798944
AT5G16560.1	KRG95394	AT2G19650.1	21798944
AT5G16560.1	KRH67075	AT2G19650.1	21798944
AT5G16560.1	KRH39044	AT3G17860.1	21798944
AT5G16560.1	KRH22725	AT3G44720.1	21798944
AT5G16560.1	KRH25168	AT3G44720.1	21798944
AT5G16560.1	KRH26581	AT3G44720.1	21798944
AT5G16560.1	KRH30513	AT3G44720.1	21798944
AT5G16560.1	KRG96343	AT3G58500.1	21798944
AT5G16560.1	KRH38026	AT3G58500.1	21798944
AT5G16560.1	KRH68078	AT3G58500.1	21798944
AT5G16560.1	KRH71796	AT3G58500.1	21798944
AT5G16560.1	KRG98830	AT4G27060.1	21798944
AT5G16560.1	KRH46114	AT4G27060.1	21798944
AT5G16560.1	KRH22128	AT4G27460.1	21798944
AT5G16560.1	KRH27215	AT4G27460.1	21798944
AT5G16560.1	KRH24392	AT4G39050.1	21798944
AT5G16560.1	KRH29374	AT4G39050.1	21798944
AT5G16560.1	KRH51475	AT4G39050.1	21798944
AT5G16560.1	KRH60786	AT4G39050.1	21798944
AT5G16560.1	KRG94592	AT5G14070.1	21798944
AT5G16560.1	KRH01571	AT5G14070.1	21798944
AT5G16560.1	KRH06898	AT5G14070.1	21798944
AT5G16560.1	KRH70543	AT5G14070.1	21798944
AT5G16560.1	KRH16959	AT5G24660.1	21798944
AT5G16560.1	KRH53667	AT5G24660.1	21798944
AT5G16560.1	KRH64261	AT5G24660.1	21798944
AT5G16560.1	KRH54704	AT5G61010.1	21798944
AT5G16560.1	KRH63230	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39002	Soybean	nucleus	90.62	91.5
KRH74367	Soybean	nucleus	25.96	39.13
Solyc06g066340.2.1	Tomato	nucleus	26.92	38.49
KRH15279	Soybean	mitochondrion	16.83	36.27
Bra008613.1-P	Field mustard	nucleus	25.0	35.74
KRH39575	Soybean	nucleus	32.21	34.36
CDY28659	Canola	nucleus	25.0	34.1
CDX70701	Canola	nucleus	31.49	34.03
CDX78699	Canola	nucleus	31.49	33.94
PGSC0003DMT400043200	Potato	nucleus	31.73	33.17
KRH17301	Soybean	nucleus	36.78	32.97
KRH72942	Soybean	nucleus	36.78	32.83
CDX69443	Canola	nucleus	31.01	32.82
VIT_04s0043g00340.t01	Wine grape	nucleus	36.54	32.55
AT5G16560.1	Thale cress	nucleus	31.49	32.51
CDY67252	Canola	nucleus	30.77	32.49
CDY38105	Canola	nucleus	31.01	32.41
CDX85500	Canola	nucleus	31.01	32.33
KRH05752	Soybean	nucleus	24.28	30.51
KXG25180	Sorghum	nucleus	34.38	30.11
KRG97985	Soybean	nucleus	33.89	29.62
GSMUA_Achr4P04510_001	Banana	nucleus	26.44	29.33
KRH61226	Soybean	nucleus	23.32	29.31
Bra023570.1-P	Field mustard	cytosol	27.88	29.15
KRH30907	Soybean	nucleus	35.1	28.91
KRH51927	Soybean	nucleus	22.6	28.48
Zm00001d032249_P002	Maize	plastid	31.97	27.59
Os08t0426866-00	Rice	nucleus	29.81	26.5
KRG99004	Soybean	nucleus	10.82	21.63
KRH14524	Soybean	nucleus	9.38	20.86
KRH73595	Soybean	nucleus	9.62	18.78
KRH11454	Soybean	nucleus	12.02	17.42
KRH36473	Soybean	nucleus	11.78	17.31
KRG90693	Soybean	nucleus	12.5	17.16
KRH75999	Soybean	nucleus	13.94	16.91
KRH22274	Soybean	nucleus	14.9	16.8
KRH49492	Soybean	nucleus	12.02	16.67
KRG89170	Soybean	nucleus	11.78	16.67
KRH65638	Soybean	nucleus	13.7	16.47
KRH27060	Soybean	nucleus	14.42	16.3
KRH11029	Soybean	nucleus	13.94	15.89
KRH21258	Soybean	nucleus	14.18	15.82
KRH00305	Soybean	nucleus	13.46	15.18
KRH42874	Soybean	nucleus	14.66	15.17
KRH49433	Soybean	nucleus	13.22	15.03
KRH58975	Soybean	nucleus	14.18	14.71
Bra006360.1-P	Field mustard	nucleus	20.91	11.87
KRH36060	Soybean	nucleus	5.29	9.02
KRH45989	Soybean	nucleus	3.37	8.7

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100796973	MapMan:15.5.2.3	EMBL:ACUP02004267	EnsemblPlantsGene:GLYMA_07G106800	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0044212	InterPro:Homeobox-like_sf	UniProt:I1KJ97	EnsemblPlants:KRH48713
ProteinID:KRH48713	ProteinID:KRH48713.1	InterPro:Myb_dom_plants	PFAM:PF00249	PANTHER:PTHR31496	PANTHER:PTHR31496:SF13
InterPro:SANT/Myb	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0002337C42	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:-:10371895..10380478

Molecular Weight (calculated)

46383.7 Da

IEP (calculated)

7.151

GRAVY (calculated)

-0.749

Length

416 amino acids

Sequence
(BLAST)

001: MPQNKIFQDQ QQSSNPIPDL SLHISLPNSA PSSICSEGDS PFDAEGLKSH SDGSIKGSSS PYYHIDTQLS LANHTSTIST PSEAESTWRK RNFVRLCHGV
101: SHEGQIRLIN GIPLYSNLSS LDNTSSTINI PSIERNQLPT NKFSFSSLYA LPHPPSAPNY GNNNGVVFGG VAVEPISRFR EMTMESALRP QQVPYFDYPH
201: QQQHQFGSSN IGASDFSNGF VRSRMFSRQQ SNKRNMRAPR MRWTSSLHNR FLHAVELLGG HERATPKSVL ELMDVKDLTL AHVKSHLQMY RTVKNTDKPA
301: ASSDGDEDFM SLTVPNDQNK NFLPNQRGTP NASIDNDMGY TSSNLWVNSS SSRGARIQAN SRDLDELSPQ EILSSQHTGK LSEGSNYIQT RSFDMDQNPS
401: LEFTLGRSNW HNNEHA

Best Arabidopsis Sequence Match ( AT5G16560.1 )
(BLAST)

001: MSMEGVFLEK TKTNTTTTLP DLSLHISLPD IHQYHHNESS KESSRRSSQL ENNNRSSNFE LSLSHHNHPT ARIFHCPDRR TLNLPHQQHY NNPIINGVHQ
101: RVDESEISNL HRPIRGIPVY HNRSFPFHQQ NSSLPSLGGG DMDQISILNS SSGYNNAYRS LQSSPRLKGV PLHHHHHHNQ YGVVGSSDSS SPHHHNHHHH
201: GMIRSRFLPK MPTKRSMRAP RMRWTSSLHA RFVHAVELLG GHERATPKSV LELMDVKDLT LAHVKSHLQM YRTVKTTNKP AASSDGSGEE EMGINGNEVH
301: HQSSTDQRAQ SDDTSLHQET DISSTQPRWS NSSRETWPLS NNCSSDIDTM IRTSSTSMIS HYQRSSIQNQ EQRSNDQAKR CGNLSCENPS LEFTLGRPDW
401: HEK

Arabidopsis Description

KAN1Transcription repressor KAN1 [Source:UniProtKB/Swiss-Prot;Acc:Q93WJ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.