CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01617
KRH07006
KRH22822
KRH23040
KRH24828
KRH29829
KRH70494
KRH75241

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27060.1	KRH01617	AT5G02530.1	21798944
AT4G27060.1	KRH07006	AT5G02530.1	21798944
AT4G27060.1	KRH23040	AT5G02530.1	21798944
AT4G27060.1	KRH24828	AT5G02530.1	21798944
AT4G27060.1	KRH29829	AT5G02530.1	21798944
AT4G27060.1	KRH70494	AT5G02530.1	21798944
AT4G27060.1	KRH75241	AT5G02530.1	21798944
AT4G27060.1	KRH22822	AT5G22890.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46114	Soybean	plastid	80.93	80.67
PGSC0003DMT400037390	Potato	plastid	56.01	59.98
Solyc10g006350.2.1	Tomato	plastid	56.12	59.95
VIT_19s0090g00020.t01	Wine grape	plastid	59.91	58.96
Bra030470.1-P	Field mustard	cytosol	45.83	54.72
CDY29609	Canola	cytosol	45.83	54.72
AT1G50890.1	Thale cress	plastid	48.0	53.96
AT4G27060.1	Thale cress	plastid	49.3	52.66
CDY29271	Canola	plastid	48.75	52.26
GSMUA_Achr9P11640_001	Banana	cytosol	48.43	51.92
GSMUA_Achr9P02790_001	Banana	plastid	41.6	51.27
CDY07335	Canola	cytosol	44.75	49.82
HORVU2Hr1G046160.2	Barley	cytosol, plastid	37.27	49.35
TraesCS2D01G226900.1	Wheat	plastid	46.05	48.02
TraesCS2A01G221200.6	Wheat	plastid	45.94	47.91
TraesCS2B01G246900.8	Wheat	plastid	45.5	47.57
CDX89282	Canola	plastid	48.97	47.53
Os07t0520400-01	Rice	cytosol, mitochondrion, nucleus, plastid	45.94	47.37
Bra026382.1-P	Field mustard	plastid	50.27	47.06
EER99458	Sorghum	plastid	46.8	46.85
Zm00001d021641_P002	Maize	plastid	45.72	45.52
Zm00001d006504_P005	Maize	plastid	42.47	42.2
KRH54469	Soybean	cytosol	18.85	27.93
KRH63453	Soybean	cytosol	18.31	27.17
KRH03379	Soybean	cytosol, mitochondrion	17.88	27.05
KRH57001	Soybean	cytosol	17.88	27.0
KRH74717	Soybean	plastid	17.55	24.29
KRH74132	Soybean	cytosol, endoplasmic reticulum, nucleus	21.02	24.1
KRH69431	Soybean	endoplasmic reticulum, nucleus	16.9	23.74

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100775602	MapMan:20.1.5.3	EMBL:ACUP02010924	InterPro:ARM-like	InterPro:ARM-type_fold
ncoils:Coil	EnsemblPlantsGene:GLYMA_18G101400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007275
GO:GO:0008017	GO:GO:0008150	GO:GO:0009653	GO:GO:0009826	GO:GO:0009987	GO:GO:0010005
GO:GO:0010031	GO:GO:0016043	GO:GO:0016049	GO:GO:0040007	UniProt:I1N0S5	InterPro:IPR011989
EnsemblPlants:KRG98830	ProteinID:KRG98830	ProteinID:KRG98830.1	PANTHER:PTHR31355	PANTHER:PTHR31355:SF7	SMART:SM01349
SUPFAM:SSF48371	InterPro:TOG	InterPro:TORTIFOLIA1/SPIRAL2-like	UniParc:UPI000233F430	SEG:seg	:

Description

hypothetical protein

Coordinates

chr18:-:10749304..10760226

Molecular Weight (calculated)

99721.7 Da

IEP (calculated)

5.531

GRAVY (calculated)

-0.526

Length

923 amino acids

Sequence
(BLAST)

001: MKHPKLQTQS TPTPSPSSRS SSLSSHLAMV ELKQKILTSL SKLSDRDTHQ IAVEDLEKTI SGLSPDAIPM ILNCLYDAAT DPKPAVKRDA LRLLAAVCGA
101: HSDAAAAHLT KIIAHVVRRL KDADSAVRDA CRDTVGALAA QYLKGDGGGG GGGVGTVVGL FVKPLFEAMG EQNKGVQAGA AVCMAKMVEC AGGSGGEAVP
201: VAAFQKLCPR IYKLLNSPNF MAKAAILPVV ASLSQVGAIA PQSLEHLLPS IHECLSSTDW ATRKAAAEAL SSLALHSSSL VTDRAAPTLA VLEACRFDKI
301: KPVRDSINEA LQLWKKIAGK GDGSPDDSKP SSDGGNESAI SSEASDPKKV NLDERKTDSP VKGSSTSSSN MDSTKAKAAS ISEKAVVILK KKPPVLSDKE
401: LNPEFFQKLE RRGSDDLPVE VVVPRRGLNS SNSNNEEESE ANAKDSKERI NSVGNIPNDD HGSSSNKYRI FERGNDGNSK QRNYDDFGHD RFSERRVNTK
501: ELRTKAYDTD GRTENDQRDG SANAAGFSKT DGQSEVPFSN NRANWLAIQR QLLQLERQQV HLMNMLQDFM GGSHDSMVTL ENRVRGLERI VEDMSRDLSI
601: SSGRRNFAGF EGSSNRPSSK YNGFNDYSSS KYGRGGDGRI PFGERFAQSD GNSLGMRGRG PSWRSDMSEG WDHSGYGASR NGQMSSRRAF GGSSADGRSP
701: KSVHENDQAG NRRAWDKAAM PIRLGEGPSA RSVWQASKDE ATLEAIRVAG EDNGTSRATR VAIPEMTAEA MADDNVGQER DAIWTSWSNA MDALQVGDLD
801: SAFAEVLSAG DDILLVKLMD KTGPVIDQLS SEVACETVNA IGQFLLDQNM YDICLSWIQQ LLEIVLENGP DTFDIPMEVK KELLLNLHEA STDPAETWEG
901: VQPDQLLLQL ASAWEIDLQQ HDK

Best Arabidopsis Sequence Match ( AT4G27060.1 )
(BLAST)

001: MSTPTTSGSA AKPTRPARSS SLATRSCSNS GSLTSFQAMV ELKQKILTSI SKLADRDTYQ IAVEDLEKTI QSLTPETLPM FLNCLYDSCS DPKPAVKKEC
101: LHLLSYVCSL HCDSTAAHLT KIIAQIVKRL KDSDSGVRDA CRDTIGALSG IYLKGKEEGT NTGSASLAVG LFVKPLFEAM GEQNKVVQSG ASMCMARMVE
201: SAASPPVTSF QKLCPRICKL LSNSSFLAKA SLLPVVSSLS QVGAIAPQSL ESLLESIHDC LGSTDWVTRK AAAETLTALA SHSSGLIKEK TDSTITVLET
301: CRFDKIKPVR ESVTEALQLW KKISGKYVDG ASDDSKLSAS EQLGSEKNGE KRSNLADLMK KEASDGSTLS PDSASKGKGC FPEKAVGLLK KKAPVLSDKD
401: FNPEFFQRLE RRQSVEVVVP RRCKNNDEEE SGLDDLNAMG SSNRLKNTQA DDKQVKGRFD GNGSQARTSG DDKAGVVNGK ETPGHHAPVS NTDNQSEGSF
501: TSNRGNWSAI QRQLLQLERQ QTNLMNMLQE FIGGSHDSMV TLEGRVRGLE RIVEDMARDL SISSGRRANL TAGFGKYNSF ANYPTGKYNG RAPGERGSQT
601: DGAMRGRMWN SDMADDWFIP PHAASRNGQA GPRRSPRSEQ YENEHMGNGR RGWDNKASGT IRFGEGPSAR SVWQASKDEA TLEAIRVAGE DGAVPRPTRV
701: AVAPEAEAMG DDDNEGQERD PIWVSWSNAM HSLRVGDIDA AYAEVLCAGD QHLVIKLMDK TGPSLDQMSN EIANEALNFI SQFLLDHSLY DICLSWSQQL
801: LELVLQDGAD TFGVPMELKT EILYNLQDAC STMDPPEDWE GPAPEQLVVQ LASVWEIDLQ QFDK

Arabidopsis Description

TOR1Microtubule-associated protein TORTIFOLIA1 [Source:UniProtKB/Swiss-Prot;Acc:Q9T041]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.