CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01617
KRH07006
KRH23040
KRH24828
KRH29829
KRH70494
KRH75241

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02530.1	KRH01617	AT5G02530.1	21798944
AT5G02530.1	KRH07006	AT5G02530.1	21798944
AT5G02530.1	KRH23040	AT5G02530.1	21798944
AT5G02530.1	KRH24828	AT5G02530.1	21798944
AT5G02530.1	KRH29829	AT5G02530.1	21798944
AT5G02530.1	KRH70494	AT5G02530.1	21798944
AT5G02530.1	KRH75241	AT5G02530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24828	Soybean	nucleus	46.5	79.02
VIT_06s0004g04340.t01	Wine grape	nucleus	78.6	78.6
KRH29829	Soybean	nucleus	79.84	78.54
GSMUA_Achr6P23530_001	Banana	nucleus	70.78	71.97
GSMUA_Achr10P...	Banana	nucleus	70.37	71.55
GSMUA_AchrUn_...	Banana	nucleus	69.55	70.71
Solyc11g073280.1.1	Tomato	nucleus	70.78	68.53
Bra020273.1-P	Field mustard	nucleus	58.85	65.6
CDX80213	Canola	nucleus	62.96	65.11
CDY09236	Canola	nucleus	58.02	64.68
CDY31583	Canola	nucleus	62.96	64.02
Bra002519.1-P	Field mustard	nucleus	62.55	63.87
AT5G59950.5	Thale cress	nucleus	61.73	61.22
PGSC0003DMT400085575	Potato	nucleus, plastid	54.32	60.83
Os11t0100200-00	Rice	nucleus	53.91	59.82
Os12t0100100-01	Rice	nucleus, plastid	55.97	59.65
Zm00001d028655_P001	Maize	extracellular, mitochondrion	59.67	57.31
EER92463	Sorghum	nucleus	59.67	56.42
GSMUA_Achr6P15310_001	Banana	nucleus	53.91	55.74
Os03t0278300-02	Rice	nucleus	60.91	54.21
CDY40364	Canola	nucleus	60.91	53.43
KRH75241	Soybean	plastid	29.22	53.38
Bra009581.1-P	Field mustard	nucleus	60.49	53.26
CDY10442	Canola	nucleus	60.91	53.05
CDX80828	Canola	nucleus	62.96	52.94
AT5G02530.1	Thale cress	plastid	63.37	52.74
CDY55544	Canola	nucleus	63.37	52.74
TraesCS4A01G099300.1	Wheat	nucleus	56.79	52.67
TraesCS4D01G205900.1	Wheat	nucleus	56.79	51.11
TraesCS4B01G205000.1	Wheat	nucleus	56.79	51.11
TraesCS5A01G157900.1	Wheat	nucleus	56.38	49.64
HORVU5Hr1G049430.2	Barley	nucleus	57.2	49.47
TraesCS5B01G155800.1	Wheat	nucleus	56.38	49.46
TraesCS5D01G163300.1	Wheat	nucleus	55.97	49.28
TraesCS4A01G178200.1	Wheat	nucleus, plastid	50.21	46.92
Zm00001d047794_P001	Maize	nucleus	48.97	46.85
TraesCS4D01G133000.1	Wheat	plastid	49.79	46.54
TraesCS4B01G138300.1	Wheat	nucleus, plastid	50.62	45.9
Bra005728.1-P	Field mustard	nucleus, plastid	61.32	44.61
KRH07006	Soybean	cytosol	19.75	44.44
Zm00001d019234_P002	Maize	extracellular	42.39	41.37
HORVU4Hr1G024270.1	Barley	plastid	51.44	40.85
EER98238	Sorghum	nucleus, plastid	42.8	40.78
Zm00001d005179_P001	Maize	plastid	33.33	38.76
KRG97938	Soybean	nucleus	46.5	37.92
KRH30937	Soybean	nucleus	46.09	37.58
TraesCS2D01G240400.1	Wheat	nucleus, plastid	40.33	36.43
TraesCS2B01G261300.1	Wheat	nucleus, plastid	40.33	36.3
KRH70494	Soybean	nucleus	39.09	35.71
TraesCS2A01G244000.1	Wheat	nucleus	32.92	34.78
OQU75650	Sorghum	nucleus	23.87	33.92
HORVU4Hr1G059090.4	Barley	plastid	48.97	33.62
KRH01617	Soybean	nucleus	27.16	32.51
Os07t0237100-00	Rice	nucleus	42.8	30.59
HORVU2Hr1G056980.6	Barley	nucleus	26.34	20.45

Protein Annotations

EntrezGene:100783362	MapMan:16.11.1.2	Gene3D:3.30.70.330	EMBL:ACUP02008452	EMBL:ACUP02008453	ncoils:Coil
InterPro:FoP_C	EnsemblPlantsGene:GLYMA_13G334200	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
UniProt:I1M4U5	InterPro:IPR000504	InterPro:IPR012677	EnsemblPlants:KRH23040	ProteinID:KRH23040	ProteinID:KRH23040.1
ProteinID:KRH23041.1	ProteinID:KRH23042.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF13865	PFscan:PS50102
PANTHER:PTHR19965	PANTHER:PTHR19965:SF51	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM01218
SUPFAM:SSF54928	UniParc:UPI0000E6474F	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:42794878..42801645

Molecular Weight (calculated)

25910.4 Da

IEP (calculated)

10.702

GRAVY (calculated)

-0.733

Length

243 amino acids

Sequence
(BLAST)

001: MSAALDMTLE DIIKNNKKSS LANTRGRGRA SGPGPARRLP NRAANRAAPY AAAKAPETAW KHDMYANQPV AAAYPGGRAS SIETGTKLYI SNLDYGVSND
101: DIKELFLEVG DVKRHTVHYD RSGRSKGTAE VVFSRRADAV AAVKRYNNVQ LDGKPMKVEI VGTNIATHAA PPAVNGTFGN PTGVPRSGQG RSGSLGRPRG
201: GSRGRGSIQR GRGRGRGGRD EKVSAEDLDA DLEKYHAEAM QLN

Best Arabidopsis Sequence Match ( AT5G59950.5 )
(BLAST)

001: MSTGLDMSLD DMIAKNRKSR GGAGPARGTG SGSGPGPTRR NNPNRKSTRS APYQSAKAPE STWGHDMFSD RSEDHRSGRS SAGIETGTKL YISNLDYGVM
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWSRG GQGRGGQQRG
201: GGRGGGGRGG GGRGRRPGKG PAEKISAEDL DADLDKYHSG DMETN

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JXE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.