Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G099300.1 | Wheat | nucleus | 95.56 | 98.47 |
| TraesCS4D01G205900.1 | Wheat | nucleus | 98.15 | 98.15 |
| Os03t0278300-02 | Rice | nucleus | 77.41 | 76.56 |
| EER92463 | Sorghum | nucleus | 71.11 | 74.71 |
| Zm00001d028655_P001 | Maize | extracellular, mitochondrion | 68.52 | 73.12 |
| HORVU4Hr1G059090.4 | Barley | plastid | 77.41 | 59.04 |
| VIT_06s0004g04340.t01 | Wine grape | nucleus | 52.22 | 58.02 |
| GSMUA_Achr10P... | Banana | nucleus | 51.11 | 57.74 |
| Zm00001d047794_P001 | Maize | nucleus | 54.07 | 57.48 |
| KRH23040 | Soybean | plastid | 51.11 | 56.79 |
| Bra020273.1-P | Field mustard | nucleus | 45.56 | 56.42 |
| CDX80213 | Canola | nucleus | 48.52 | 55.74 |
| CDY31583 | Canola | nucleus | 49.26 | 55.65 |
| GSMUA_Achr6P23530_001 | Banana | nucleus | 49.26 | 55.65 |
| GSMUA_AchrUn_... | Banana | nucleus | 49.26 | 55.65 |
| CDY09236 | Canola | nucleus | 44.81 | 55.5 |
| Bra002519.1-P | Field mustard | nucleus | 48.89 | 55.46 |
| KRH29829 | Soybean | nucleus | 50.37 | 55.06 |
| Solyc11g073280.1.1 | Tomato | nucleus | 51.11 | 54.98 |
| AT5G59950.5 | Thale cress | nucleus | 49.63 | 54.69 |
| Solyc10g086400.1.1 | Tomato | nucleus | 48.15 | 54.39 |
| KRH24828 | Soybean | nucleus | 28.52 | 53.85 |
| PGSC0003DMT400049444 | Potato | cytosol | 49.26 | 53.85 |
| PGSC0003DMT400085575 | Potato | nucleus, plastid | 42.22 | 52.53 |
| VIT_13s0019g00640.t01 | Wine grape | cytosol | 30.0 | 50.62 |
| PGSC0003DMT400049442 | Potato | nucleus | 40.37 | 48.23 |
| Bra009581.1-P | Field mustard | nucleus | 48.52 | 47.46 |
| CDY40364 | Canola | nucleus | 48.52 | 47.29 |
| GSMUA_Achr6P15310_001 | Banana | nucleus | 41.11 | 47.23 |
| CDY10442 | Canola | nucleus | 47.78 | 46.24 |
| CDX80828 | Canola | nucleus | 48.89 | 45.67 |
| CDY55544 | Canola | nucleus | 49.26 | 45.55 |
| TraesCS5B01G155800.1 | Wheat | nucleus | 46.3 | 45.13 |
| AT5G02530.1 | Thale cress | plastid | 48.52 | 44.86 |
| TraesCS4B01G138300.1 | Wheat | nucleus, plastid | 41.48 | 41.79 |
| KRH75241 | Soybean | plastid | 20.37 | 41.35 |
| Bra005728.1-P | Field mustard | nucleus, plastid | 48.15 | 38.92 |
| KRH07006 | Soybean | cytosol | 14.81 | 37.04 |
| TraesCS2B01G261300.1 | Wheat | nucleus, plastid | 37.04 | 37.04 |
| TraesCS2B01G073800.1 | Wheat | nucleus | 37.78 | 36.56 |
| TraesCS7B01G111100.1 | Wheat | nucleus | 40.0 | 35.88 |
| KRH70494 | Soybean | nucleus | 31.11 | 31.58 |
| KRH01617 | Soybean | nucleus | 22.22 | 29.56 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G205000.1 | EnsemblPlantsGene:TraesCS4B01G205000 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:FoP_C | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR19965 | PANTHER:PTHR19965:SF51 | PFAM:PF00076 | PFAM:PF13865 | PFscan:PS50102 | SEG:seg |
| SMART:SM00360 | SMART:SM01218 | SUPFAM:SSF54928 | TIGR:cd12680 | MapMan:16.11.1.2 | : |
Description
No Description!
Coordinates
chr4B:+:437071637..437073803
Molecular Weight (calculated)
28168.9 Da
IEP (calculated)
10.965
GRAVY (calculated)
-0.792
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MAESLDMSLD DIIKSNKKGN SSSGGGGRRR EGRRGSAAAG SGAAAAAAGG VGPNRRAFKR SGNRAAPYQP PKAPESAWQH DMYSDASARG GGGGRVSAIE
101: TGTKLLITNL DFGVSTEDLK ELFSELGDVK RCLIHYDRSG RSKGTAEVIF ARRGDAVAAL RKYNNVQLDG KPMKIEILGT NTPTAPAALP TNNGTYARNV
201: AKSAPRGVSA SLPQNRSRAR GGRGRRGGGG GSGSGGRRGK ERSQPRSAEE LDAELEKYHA QGTTPMQTAE
101: TGTKLLITNL DFGVSTEDLK ELFSELGDVK RCLIHYDRSG RSKGTAEVIF ARRGDAVAAL RKYNNVQLDG KPMKIEILGT NTPTAPAALP TNNGTYARNV
201: AKSAPRGVSA SLPQNRSRAR GGRGRRGGGG GSGSGGRRGK ERSQPRSAEE LDAELEKYHA QGTTPMQTAE
001: MSTGLDMSLD DMIAKNRKSR GGAGPARGTG SGSGPGPTRR NNPNRKSTRS APYQSAKAPE STWGHDMFSD RSEDHRSGRS SAGIETGTKL YISNLDYGVM
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWSRG GQGRGGQQRG
201: GGRGGGGRGG GGRGRRPGKG PAEKISAEDL DADLDKYHSG DMETN
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWSRG GQGRGGQQRG
201: GGRGGGGRGG GGRGRRPGKG PAEKISAEDL DADLDKYHSG DMETN
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JXE3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.