Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH70494 | Soybean | nucleus | 72.91 | 55.64 |
| KRH07006 | Soybean | cytosol | 26.11 | 49.07 |
| KRH24828 | Soybean | nucleus | 27.59 | 39.16 |
| GSMUA_AchrUn_... | Banana | nucleus | 34.48 | 29.29 |
| KRH29829 | Soybean | nucleus | 35.47 | 29.15 |
| GSMUA_Achr10P... | Banana | nucleus | 33.99 | 28.87 |
| Os11t0100200-00 | Rice | nucleus | 30.54 | 28.31 |
| VIT_13s0019g00640.t01 | Wine grape | cytosol | 22.17 | 28.12 |
| GSMUA_Achr6P23530_001 | Banana | nucleus | 33.0 | 28.03 |
| Os12t0100100-01 | Rice | nucleus, plastid | 30.54 | 27.19 |
| KRH23040 | Soybean | plastid | 32.51 | 27.16 |
| Bra020273.1-P | Field mustard | nucleus | 27.59 | 25.69 |
| CDY10442 | Canola | nucleus | 34.98 | 25.45 |
| AT5G59950.5 | Thale cress | nucleus | 30.54 | 25.31 |
| CDY09236 | Canola | nucleus | 27.09 | 25.23 |
| TraesCS4D01G133000.1 | Wheat | plastid | 32.02 | 25.0 |
| TraesCS4B01G138300.1 | Wheat | nucleus, plastid | 33.0 | 25.0 |
| TraesCS4A01G178200.1 | Wheat | nucleus, plastid | 32.02 | 25.0 |
| CDX80213 | Canola | nucleus | 28.57 | 24.68 |
| Bra009581.1-P | Field mustard | nucleus | 33.5 | 24.64 |
| CDY40364 | Canola | nucleus | 33.5 | 24.55 |
| Bra002519.1-P | Field mustard | nucleus | 28.57 | 24.37 |
| TraesCS5A01G157900.1 | Wheat | nucleus | 33.0 | 24.28 |
| TraesCS5D01G163300.1 | Wheat | nucleus | 33.0 | 24.28 |
| CDY31583 | Canola | nucleus | 28.57 | 24.27 |
| HORVU5Hr1G049430.2 | Barley | nucleus | 33.5 | 24.2 |
| TraesCS5B01G155800.1 | Wheat | nucleus | 33.0 | 24.19 |
| AT5G02530.1 | Thale cress | plastid | 34.48 | 23.97 |
| GSMUA_Achr6P15310_001 | Banana | nucleus | 27.59 | 23.83 |
| EER92463 | Sorghum | nucleus | 30.05 | 23.74 |
| Zm00001d028655_P001 | Maize | extracellular, mitochondrion | 29.56 | 23.72 |
| CDX80828 | Canola | nucleus | 33.5 | 23.53 |
| Zm00001d019234_P002 | Maize | extracellular | 28.57 | 23.29 |
| Os03t0278300-02 | Rice | nucleus | 31.03 | 23.08 |
| CDY55544 | Canola | nucleus | 33.0 | 22.95 |
| EER98238 | Sorghum | nucleus, plastid | 28.57 | 22.75 |
| TraesCS4A01G099300.1 | Wheat | nucleus | 29.06 | 22.52 |
| TraesCS4B01G205000.1 | Wheat | nucleus | 29.56 | 22.22 |
| TraesCS4D01G205900.1 | Wheat | nucleus | 29.06 | 21.85 |
| HORVU4Hr1G024270.1 | Barley | plastid | 32.51 | 21.57 |
| TraesCS2D01G240400.1 | Wheat | nucleus, plastid | 27.59 | 20.82 |
| KRG97938 | Soybean | nucleus | 30.54 | 20.81 |
| TraesCS2B01G261300.1 | Wheat | nucleus, plastid | 27.59 | 20.74 |
| KRH30937 | Soybean | nucleus | 30.05 | 20.47 |
| Zm00001d005179_P001 | Maize | plastid | 20.69 | 20.1 |
| Zm00001d047794_P001 | Maize | nucleus | 24.63 | 19.68 |
| Bra005728.1-P | Field mustard | nucleus, plastid | 30.54 | 18.56 |
| TraesCS2A01G244000.1 | Wheat | nucleus | 20.69 | 18.26 |
| KRH75241 | Soybean | plastid | 10.84 | 16.54 |
| OQU75650 | Sorghum | nucleus | 13.79 | 16.37 |
| Os07t0237100-00 | Rice | nucleus | 26.11 | 15.59 |
| HORVU4Hr1G059090.4 | Barley | plastid | 24.63 | 14.12 |
| HORVU2Hr1G056980.6 | Barley | nucleus | 20.2 | 13.1 |
Protein Annotations
| EMBL:ACUP02011523 | EnsemblPlants:KRH01617 | EnsemblPlantsGene:GLYMA_18G288400 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR19965 | PANTHER:PTHR19965:SF36 | PFAM:PF00076 | ProteinID:KRH01617 | ProteinID:KRH01617.1 |
| SUPFAM:SSF54928 | UniParc:UPI0006ED9616 | UniProt:A0A0R0F5I2 | MapMan:16.11.1.2 | : | : |
Description
hypothetical protein
Coordinates
chr18:+:56812346..56817728
Molecular Weight (calculated)
23166.7 Da
IEP (calculated)
10.255
GRAVY (calculated)
-0.732
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGIDMSLD DIMKRSAAAV ASRCRFTVVR NPARTTSYPI TQVNHYDQSG RSKGTAEVVF VRYHDALAAI KKYNNMRLDG KPLQIELAGT SSATPAVTPL
101: CQNNLMGRPN DHMRKGWRYW VPQCFAQGHL PRGRGEEKDH IRKVSSGYLD HSFERFHRTQ TQRPRKNLDD DLERYHLEAL SGLKSKMESS VGIYVLYKRN
201: NHM
101: CQNNLMGRPN DHMRKGWRYW VPQCFAQGHL PRGRGEEKDH IRKVSSGYLD HSFERFHRTQ TQRPRKNLDD DLERYHLEAL SGLKSKMESS VGIYVLYKRN
201: NHM
001: MSGGLDMSLD DIIKSNRKPT GSRGRGGIGG GNNTGGRGGS GSNSGPSRRF ANRVGARTAP YSRPIQQQQA HDAMWQNDVF ATDASVAAAF GHHQTAVVGG
101: GSSIETGTKL YISNLDYGVS NEDIKELFSE VGDLKRYGIH YDRSGRSKGT AEVVFSRRGD ALAAVKRYNN VQLDGKLMKI EIVGTNLSAP ALPILATAQI
201: PFPTNGILGN FNENFNGNFN GNFNGNFRGR GGFMGRPRGG GFGGGNFRGG RGARGRGGRG SGGRGRDENV SAEDLDAELD KYHKEAMETS
101: GSSIETGTKL YISNLDYGVS NEDIKELFSE VGDLKRYGIH YDRSGRSKGT AEVVFSRRGD ALAAVKRYNN VQLDGKLMKI EIVGTNLSAP ALPILATAQI
201: PFPTNGILGN FNENFNGNFN GNFNGNFRGR GGFMGRPRGG GFGGGNFRGG RGARGRGGRG SGGRGRDENV SAEDLDAELD KYHKEAMETS
Arabidopsis Description
ALY2THO complex subunit 4B [Source:UniProtKB/Swiss-Prot;Acc:Q8L719]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.