CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92463
EER98238
OQU75650

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02530.1	EER92463	AT5G02530.1	21798944
AT5G02530.1	EER98238	AT5G02530.1	21798944
AT5G02530.1	OQU75650	AT5G02530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019234_P002	Maize	extracellular	89.02	91.16
Zm00001d005179_P001	Maize	plastid	71.76	87.56
TraesCS2B01G261300.1	Wheat	nucleus, plastid	69.41	65.56
TraesCS2D01G240400.1	Wheat	nucleus, plastid	69.02	65.43
TraesCS2A01G244000.1	Wheat	nucleus	56.86	63.04
Os07t0237100-00	Rice	nucleus	72.55	54.41
VIT_13s0019g00640.t01	Wine grape	cytosol	30.2	48.12
KRH24828	Soybean	nucleus	25.1	44.76
VIT_06s0004g04340.t01	Wine grape	nucleus	42.35	44.44
Bra020273.1-P	Field mustard	nucleus	37.65	44.04
CDY31583	Canola	nucleus	40.78	43.51
CDX80213	Canola	nucleus	40.0	43.4
Bra002519.1-P	Field mustard	nucleus	40.39	43.28
CDY09236	Canola	nucleus	36.86	43.12
Solyc10g086400.1.1	Tomato	nucleus	40.39	43.1
KRH23040	Soybean	plastid	40.78	42.8
AT5G59950.5	Thale cress	nucleus	40.78	42.45
PGSC0003DMT400049444	Potato	cytosol	40.78	42.11
KRH29829	Soybean	nucleus	40.78	42.11
Solyc11g073280.1.1	Tomato	nucleus	41.18	41.83
EER92463	Sorghum	nucleus	41.18	40.86
Bra009581.1-P	Field mustard	nucleus	43.14	39.86
CDY40364	Canola	nucleus	43.14	39.71
CDX80828	Canola	nucleus	44.71	39.45
CDY10442	Canola	nucleus	42.75	39.07
PGSC0003DMT400085575	Potato	nucleus, plastid	32.94	38.71
PGSC0003DMT400049442	Potato	nucleus	34.12	38.5
CDY55544	Canola	nucleus	43.92	38.36
AT5G02530.1	Thale cress	plastid	42.75	37.33
KRH07006	Soybean	cytosol	14.51	34.26
HORVU2Hr1G056980.6	Barley	nucleus	40.78	33.23
EES15014	Sorghum	nucleus	35.29	33.09
Bra005728.1-P	Field mustard	nucleus, plastid	43.14	32.93
KRH75241	Soybean	plastid	16.86	32.33
KRH70494	Soybean	nucleus	33.73	32.33
EER89547	Sorghum	nucleus	34.9	28.99
KRH01617	Soybean	nucleus	22.75	28.57
OQU75650	Sorghum	nucleus	18.43	27.49

Protein Annotations

MapMan:16.11.1.2	Gene3D:3.30.70.330	EntrezGene:8069134	UniProt:C5XDI8	EnsemblPlants:EER98238	ProteinID:EER98238
ProteinID:EER98238.1	InterPro:FoP_C	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF13865	PFscan:PS50102
PANTHER:PTHR19965	PANTHER:PTHR19965:SF26	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM01218
EnsemblPlantsGene:SORBI_3002G083900	SUPFAM:SSF54928	unigene:Sbi.13614	UniParc:UPI0001A83DC0	RefSeq:XP_002461717.1	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:8942255..8952208

Molecular Weight (calculated)

27143.0 Da

IEP (calculated)

10.146

GRAVY (calculated)

-0.675

Length

255 amino acids

Sequence
(BLAST)

001: MSSGLDMSLD DLIKKSKSRP KANPASSSGP ARRAPHPARA APYPPAAPKA RAAADSPYGV YSEHIATIAA VAPPPAAAAA TARSLETGTK LHISNLDPGV
101: TVEDVQELFS EVGELKRYSM NYDKDGRSKG TAEVVFARKV DALDAIKRYN GVLLDGKPMN LELIGNNVEP PPMPPLIPNR PLQNYNDIHI SVPQSQRGGQ
201: RRAPQGNGRP GRSSQSSGGR RQGKGRGLDR NRTAISAADL DAELDKYHAA AVKEE

Best Arabidopsis Sequence Match ( AT5G59950.5 )
(BLAST)

001: MSTGLDMSLD DMIAKNRKSR GGAGPARGTG SGSGPGPTRR NNPNRKSTRS APYQSAKAPE STWGHDMFSD RSEDHRSGRS SAGIETGTKL YISNLDYGVM
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWSRG GQGRGGQQRG
201: GGRGGGGRGG GGRGRRPGKG PAEKISAEDL DADLDKYHSG DMETN

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JXE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.