CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037352_P001	Maize	plasma membrane	89.9	90.2
Os06t0256200-01	Rice	nucleus	79.15	82.65
TraesCS7D01G207200.1	Wheat	nucleus	74.59	76.08
HORVU7Hr1G041520.2	Barley	nucleus	74.27	75.75
TraesCS7B01G111100.1	Wheat	nucleus	73.94	75.42
TraesCS7A01G204100.1	Wheat	nucleus	73.62	75.08
VIT_14s0006g01020.t01	Wine grape	nucleus	48.53	55.39
EES15014	Sorghum	nucleus	48.53	54.78
GSMUA_Achr5P05950_001	Banana	nucleus	48.53	54.58
GSMUA_Achr2P18730_001	Banana	nucleus	52.77	52.77
Solyc04g014460.2.1	Tomato	nucleus	46.58	52.57
Solyc11g011130.1.1	Tomato	nucleus	47.56	51.59
PGSC0003DMT400060737	Potato	nucleus	45.93	51.09
PGSC0003DMT400040562	Potato	nucleus	46.91	51.06
KRG97938	Soybean	nucleus	49.51	51.01
KRH30937	Soybean	nucleus	48.86	50.34
AT5G37720.1	Thale cress	nucleus	41.04	43.75
CDY49635	Canola	nucleus, plastid	40.72	43.4
CDY07496	Canola	nucleus, plastid	40.72	43.4
Bra004158.1-P	Field mustard	nucleus, plastid	40.72	43.4
CDY01711	Canola	nucleus	41.37	43.34
AT1G66260.1	Thale cress	nucleus	40.07	41.69
EER92463	Sorghum	nucleus	34.2	40.86
Bra028145.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	32.9	38.85
CDX74565	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	32.9	38.85
EER98238	Sorghum	nucleus, plastid	28.99	34.9
OQU75650	Sorghum	nucleus	15.31	27.49

Protein Annotations

MapMan:16.11.1.2	Gene3D:3.30.70.330	EntrezGene:8061518	UniProt:C5Z804	EnsemblPlants:EER89547	ProteinID:EER89547
ProteinID:EER89547.1	InterPro:FoP_C	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR19965
PANTHER:PTHR19965:SF27	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM01218	EnsemblPlantsGene:SORBI_3010G105600
SUPFAM:SSF54928	unigene:Sbi.11682	UniParc:UPI0001A899C2	RefSeq:XP_002438180.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:-:10053606..10061150

Molecular Weight (calculated)

32958.1 Da

IEP (calculated)

11.721

GRAVY (calculated)

-0.638

Length

307 amino acids

Sequence
(BLAST)

001: MATSLDVPLD DLIKSRNGRG RGRGRGQGGR GRGDGQRLAR GSWRGRGTGT FRGRGLGVPS RRPLGVNTRS SSFAIAKSFN KAKDFVWRHD LFEDSMVAAG
101: LSGIESGTKL YISNLHYGVT REDIQELFSE MGHLKHCAVH YDSYRHPTGS AEVIFTRRSE ALAALKRYNN VRLDGKAMKI EVIGADLGLS SAAAPRISVV
201: PGASGRGQRE VVMMPGGSGF GLGASGPSSS LPGWKRGGFV QRGGQGRGGF AQRGRGQVRG RGRGRGRSSF GQVRGRGYVR KGNVEKSAEQ LDKDLDNYHH
301: SGAMNVD

Best Arabidopsis Sequence Match ( AT5G37720.1 )
(BLAST)

001: MSGALNMTLD EIVKRGKTAR SGGRGISRGR GRGRGGGGRG AGPARRGPLA VNARPSSFTI NKPVRRVRSL PWQSGLFEDG LRAAGASGVE VGTRLHVTNL
101: DQGVTNEDIR ELFSEIGEVE RYAIHYDKNG RPSGTAEVVY PRRSDAFQAL KKYNNVLLDG RPMRLEILGG NNSSEAPLSG RVNVNVTGLN GRLKRTVVIQ
201: QGGGGRGRVR GGRGGRGPAP TVSRRLPIHN QQGGGMRGGR GGFRARGRGN GGRGRGGGRG NGKKPVEKSA ADLDKDLESY HADAMNTS

Arabidopsis Description

ALY4THO complex subunit 4D [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.