Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01711 | Canola | nucleus | 84.72 | 83.28 |
| Bra028145.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 70.49 | 78.08 |
| CDX74565 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 70.49 | 78.08 |
| AT1G66260.1 | Thale cress | nucleus | 72.57 | 70.85 |
| VIT_14s0006g01020.t01 | Wine grape | nucleus | 55.56 | 59.48 |
| Solyc11g011130.1.1 | Tomato | nucleus | 58.33 | 59.36 |
| PGSC0003DMT400040562 | Potato | nucleus | 57.99 | 59.22 |
| Solyc04g014460.2.1 | Tomato | nucleus | 54.17 | 57.35 |
| PGSC0003DMT400060737 | Potato | nucleus | 54.86 | 57.25 |
| KRG97938 | Soybean | nucleus | 58.33 | 56.38 |
| KRH30937 | Soybean | nucleus | 57.99 | 56.04 |
| GSMUA_Achr5P05950_001 | Banana | nucleus | 45.83 | 48.35 |
| Zm00001d050357_P005 | Maize | plasma membrane | 45.14 | 48.33 |
| EES15014 | Sorghum | nucleus | 45.14 | 47.79 |
| GSMUA_Achr2P18730_001 | Banana | nucleus | 49.31 | 46.25 |
| TraesCS2B01G073800.1 | Wheat | nucleus | 44.1 | 45.52 |
| Os06t0256200-01 | Rice | nucleus | 46.18 | 45.24 |
| TraesCS2A01G060200.1 | Wheat | nucleus | 43.4 | 44.96 |
| TraesCS2D01G059800.1 | Wheat | nucleus | 43.75 | 44.84 |
| AT5G59950.5 | Thale cress | nucleus | 36.81 | 43.27 |
| Os08t0427900-01 | Rice | nucleus | 42.36 | 42.66 |
| TraesCS7A01G204100.1 | Wheat | nucleus | 44.1 | 42.19 |
| TraesCS7B01G111100.1 | Wheat | nucleus | 44.1 | 42.19 |
| TraesCS7D01G207200.1 | Wheat | nucleus | 43.75 | 41.86 |
| EER89547 | Sorghum | nucleus | 43.75 | 41.04 |
| HORVU7Hr1G041520.2 | Barley | nucleus | 42.36 | 40.53 |
| AT5G02530.1 | Thale cress | plastid | 38.89 | 38.36 |
| HORVU2Hr1G011700.2 | Barley | nucleus | 44.44 | 38.1 |
| Zm00001d037352_P001 | Maize | plasma membrane | 38.54 | 36.27 |
Protein Annotations
| MapMan:16.11.1.2 | Gene3D:3.30.70.330 | EntrezGene:833750 | UniProt:A0A178UKT9 | ProteinID:AED94222.1 | EMBL:AJ278493 |
| EMBL:AK227931 | Symbol:ALY4 | ArrayExpress:AT5G37720 | EnsemblPlantsGene:AT5G37720 | RefSeq:AT5G37720 | TAIR:AT5G37720 |
| RefSeq:AT5G37720-TAIR-G | EnsemblPlants:AT5G37720.1 | TAIR:AT5G37720.1 | Unigene:At.22374 | ProteinID:BAB08317.1 | EMBL:BT010588 |
| InterPro:FoP_C | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005730 |
| GO:GO:0006810 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0008150 | GO:GO:0051028 | InterPro:IPR000504 |
| InterPro:IPR012677 | RefSeq:NP_198588.2 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:OAO93714.1 | PFAM:PF00076 | PFAM:PF13865 |
| PO:PO:0000293 | PFscan:PS50102 | PANTHER:PTHR19965 | PANTHER:PTHR19965:SF33 | UniProt:Q6NQ72 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SMART:SM01218 | SUPFAM:SSF54928 | UniParc:UPI0000196FA5 | SEG:seg |
Description
ALY4THO complex subunit 4D [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ72]
Coordinates
chr5:-:14981619..14984652
Molecular Weight (calculated)
30437.2 Da
IEP (calculated)
12.095
GRAVY (calculated)
-0.768
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGALNMTLD EIVKRGKTAR SGGRGISRGR GRGRGGGGRG AGPARRGPLA VNARPSSFTI NKPVRRVRSL PWQSGLFEDG LRAAGASGVE VGTRLHVTNL
101: DQGVTNEDIR ELFSEIGEVE RYAIHYDKNG RPSGTAEVVY PRRSDAFQAL KKYNNVLLDG RPMRLEILGG NNSSEAPLSG RVNVNVTGLN GRLKRTVVIQ
201: QGGGGRGRVR GGRGGRGPAP TVSRRLPIHN QQGGGMRGGR GGFRARGRGN GGRGRGGGRG NGKKPVEKSA ADLDKDLESY HADAMNTS
101: DQGVTNEDIR ELFSEIGEVE RYAIHYDKNG RPSGTAEVVY PRRSDAFQAL KKYNNVLLDG RPMRLEILGG NNSSEAPLSG RVNVNVTGLN GRLKRTVVIQ
201: QGGGGRGRVR GGRGGRGPAP TVSRRLPIHN QQGGGMRGGR GGFRARGRGN GGRGRGGGRG NGKKPVEKSA ADLDKDLESY HADAMNTS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.