Factsheet for VIT_14s0006g01020.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
nucleus 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97938	Soybean	nucleus	73.61	66.44
Solyc04g014460.2.1	Tomato	nucleus	66.17	65.44
Solyc11g011130.1.1	Tomato	nucleus	68.03	64.66
PGSC0003DMT400040562	Potato	nucleus	67.66	64.54
KRH30937	Soybean	nucleus	71.38	64.43
PGSC0003DMT400060737	Potato	nucleus	65.8	64.13
GSMUA_Achr5P05950_001	Banana	nucleus	60.59	59.71
GSMUA_Achr2P18730_001	Banana	nucleus	63.57	55.7
AT5G37720.1	Thale cress	nucleus	59.48	55.56
EES15014	Sorghum	nucleus	56.13	55.51
Zm00001d050357_P005	Maize	plasma membrane	55.02	55.02
Os06t0256200-01	Rice	nucleus	58.74	53.74
CDY01711	Canola	nucleus	58.36	53.58
AT1G66260.1	Thale cress	nucleus	58.36	53.22
Bra004158.1-P	Field mustard	nucleus, plastid	56.13	52.43
CDY49635	Canola	nucleus, plastid	56.13	52.43
CDY07496	Canola	nucleus, plastid	56.13	52.43
TraesCS2B01G073800.1	Wheat	nucleus	53.9	51.97
TraesCS2A01G060200.1	Wheat	nucleus	53.53	51.8
TraesCS2D01G059800.1	Wheat	nucleus	53.9	51.6
Os08t0427900-01	Rice	nucleus	53.9	50.7
VIT_06s0004g04340.t01	Wine grape	nucleus	45.35	50.21
CDX74565	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	47.96	49.62
Bra028145.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	47.96	49.62
TraesCS7D01G207200.1	Wheat	nucleus	54.65	48.84
EER89547	Sorghum	nucleus	55.39	48.53
TraesCS7A01G204100.1	Wheat	nucleus	54.28	48.51
TraesCS7B01G111100.1	Wheat	nucleus	54.28	48.51
HORVU7Hr1G041520.2	Barley	nucleus	53.9	48.17
VIT_13s0019g00640.t01	Wine grape	cytosol	27.14	45.62
Zm00001d037352_P001	Maize	plasma membrane	50.19	44.12
HORVU2Hr1G011700.2	Barley	nucleus	54.65	43.75

Protein Annotations

EntrezGene:100257009	wikigene:100257009	MapMan:16.11.1.2	Gene3D:3.30.70.330	ProteinID:CBI33510	ProteinID:CBI33510.3
UniProt:D7TSN8	EMBL:FN596245	InterPro:FoP_C	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100257009	wikigene:LOC100257009	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF13865	PFscan:PS50102	PANTHER:PTHR19965	PANTHER:PTHR19965:SF33	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SMART:SM01218	SUPFAM:SSF54928	TIGR:TC62628	UniParc:UPI0001984C38
ArrayExpress:VIT_14s0006g01020	EnsemblPlantsGene:VIT_14s0006g01020	EnsemblPlants:VIT_14s0006g01020.t01	unigene:Vvi.12233	RefSeq:XP_002276497	RefSeq:XP_002276497.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr14:+:16101562..16116026

Molecular Weight (calculated)

29386.0 Da

IEP (calculated)

11.650

GRAVY (calculated)

-0.761

Length

269 amino acids

Sequence
(BLAST)

001: MATSLDMSLD DIIKRSNSER VRGRGRARRG RGPIGGSFNG GRMSGIPPRR GPLRVNARPS SYAIAKSSRR TKIPWQHDLF EDSLRAAGLP GLEAGTKLYI
101: SNLDYGVTNE DIRELFSEIG DIKRYAVHYE KNGRPSGSAE VVYTRRSDAF AAVKRYNNVL LDGKPMKIEI IGSDSDMPVS ARVNVIGGVN GKRRRTVVMT
201: PGVGHARGST AINRSSSRRG RGGLSNGRGR GRAGSRGRGR GRGRKQPVEK SAVELDKELD NYHAEAMHT

Best Arabidopsis Sequence Match ( AT5G37720.2 )
(BLAST)

001: MSGALNMTLD EIVKRGKTAR SGGRGISRGR GRGRGGGGRG AGPARRGPLA VNARPSSFTI NKPVRRVRSL PWQSGLFEDG LRAAGASGVE VGTRLHVTNL
101: DQGVTNEDIR ELFSEIGEVE RYAIHYDKNG RPSGTAEVVY PRRSDAFQAL KKYNNVLLDG RPMRLEILGG NNSSEAPLSG RVNVNVTGLN GRLKRTVVIQ
201: VRGGRGGRGP APTVSRRLPI HNQQGGGMRG GRGGFRARGR GNGGRGRGGG RGNGKKPVEK SAADLDKDLE SYHADAMNTS

Arabidopsis Description

ALY4THO complex subunit 4D [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.