Factsheet for Os08t0427900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
nucleus: 23303719

msms PMID: 23303719 doi

Q He, L Chen, Y Xu, W Yu

State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES15014	Sorghum	nucleus	83.92	88.24
Zm00001d050357_P005	Maize	plasma membrane	82.17	87.36
TraesCS2A01G060200.1	Wheat	nucleus	81.47	83.81
TraesCS2B01G073800.1	Wheat	nucleus	81.47	83.51
TraesCS2D01G059800.1	Wheat	nucleus	81.82	83.27
HORVU2Hr1G011700.2	Barley	nucleus	80.77	68.75
GSMUA_Achr5P05950_001	Banana	nucleus	56.29	58.97
GSMUA_Achr2P18730_001	Banana	nucleus	59.44	55.37
VIT_14s0006g01020.t01	Wine grape	nucleus	50.7	53.9
PGSC0003DMT400040562	Potato	nucleus	50.35	51.06
Solyc11g011130.1.1	Tomato	nucleus	50.35	50.88
KRG97938	Soybean	nucleus	51.4	49.33
Solyc04g014460.2.1	Tomato	nucleus	46.85	49.26
PGSC0003DMT400060737	Potato	nucleus	46.85	48.55
KRH30937	Soybean	nucleus	50.35	48.32
Os06t0256200-01	Rice	nucleus	49.3	47.96
CDY01711	Canola	nucleus	45.1	44.03
Os11t0100200-00	Rice	nucleus	32.52	42.47
AT5G37720.1	Thale cress	nucleus	42.66	42.36
CDY49635	Canola	nucleus, plastid	42.31	42.01
CDY07496	Canola	nucleus, plastid	42.31	42.01
Bra004158.1-P	Field mustard	nucleus, plastid	42.31	42.01
CDX74565	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	38.11	41.92
Bra028145.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	38.11	41.92
Os12t0100100-01	Rice	nucleus, plastid	32.87	41.23
AT1G66260.1	Thale cress	nucleus	42.31	41.02
Os03t0278300-02	Rice	nucleus	37.06	38.83
Os07t0237100-00	Rice	nucleus	31.47	26.47

Protein Annotations

MapMan:16.11.1.2	Gene3D:3.30.70.330	EntrezGene:4345621	ProteinID:BAD01191.1	ProteinID:BAD01466.1	ProteinID:BAF23759.1
ProteinID:BAT05523.1	InterPro:FoP_C	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os08g0427900	EnsemblPlants:Os08t0427900-01	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR19965	PANTHER:PTHR19965:SF33	UniProt:Q7EY69	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SMART:SM01218	SUPFAM:SSF54928	UniParc:UPI0000212F85	RefSeq:XP_015649900.1	SEG:seg

Description

Similar to Hin19 (Fragment). (Os08t0427900-01);Hypothetical conserved gene. (Os08t0427900-02)

Coordinates

chr8:-:20578999..20583495

Molecular Weight (calculated)

30493.1 Da

IEP (calculated)

11.579

GRAVY (calculated)

-0.700

Length

286 amino acids

Sequence
(BLAST)

001: MAYYARRGGD RVSGGGRVQG GGGGGGGGGR GGYVLRGRSG MPPRGPLGLG VNSRPSARTI AKSFSRTKDM TWRPDLFSDS MAASGIETGT KLYISNLDYG
101: VSNEDIKELF SEVGHLKRFA VHFDGYGRPN GTAEVVFTRR SDAIAALKRY NNVLLDGKAM KIEVIGSDLG LPMTPRINVV GASNGRPTRT VVMTPEIGQR
201: GSGSSSRPTG PTVNRYNRGA FQAGRGRGRG RGRAPFQSQF QGRGTGSVRG RGQFQGRGRG RRQAGKTADE LDKDLETYHA EAMKTD

Best Arabidopsis Sequence Match ( AT5G37720.2 )
(BLAST)

001: MSGALNMTLD EIVKRGKTAR SGGRGISRGR GRGRGGGGRG AGPARRGPLA VNARPSSFTI NKPVRRVRSL PWQSGLFEDG LRAAGASGVE VGTRLHVTNL
101: DQGVTNEDIR ELFSEIGEVE RYAIHYDKNG RPSGTAEVVY PRRSDAFQAL KKYNNVLLDG RPMRLEILGG NNSSEAPLSG RVNVNVTGLN GRLKRTVVIQ
201: VRGGRGGRGP APTVSRRLPI HNQQGGGMRG GRGGFRARGR GNGGRGRGGG RGNGKKPVEK SAADLDKDLE SYHADAMNTS

Arabidopsis Description

ALY4THO complex subunit 4D [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.