Factsheet for Solyc11g011130.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040562	Potato	nucleus	96.82	97.16
Solyc04g014460.2.1	Tomato	nucleus	78.09	81.25
VIT_14s0006g01020.t01	Wine grape	nucleus	64.66	68.03
KRG97938	Soybean	nucleus	63.6	60.4
KRH30937	Soybean	nucleus	63.25	60.07
AT5G37720.1	Thale cress	nucleus	59.36	58.33
CDY01711	Canola	nucleus	58.66	56.66
GSMUA_Achr5P05950_001	Banana	nucleus	54.06	56.04
Zm00001d050357_P005	Maize	plasma membrane	51.94	54.65
EES15014	Sorghum	nucleus	52.3	54.41
Os06t0256200-01	Rice	nucleus	55.83	53.74
AT1G66260.1	Thale cress	nucleus	55.12	52.88
Bra028145.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	48.41	52.69
CDX74565	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	48.41	52.69
TraesCS2A01G060200.1	Wheat	nucleus	51.59	52.52
GSMUA_Achr2P18730_001	Banana	nucleus	56.89	52.44
CDY49635	Canola	nucleus, plastid	53.36	52.43
Bra004158.1-P	Field mustard	nucleus, plastid	53.36	52.43
CDY07496	Canola	nucleus, plastid	53.36	52.43
TraesCS2D01G059800.1	Wheat	nucleus	51.94	52.31
TraesCS2B01G073800.1	Wheat	nucleus	51.24	51.97
Os08t0427900-01	Rice	nucleus	50.88	50.35
Solyc11g073280.1.1	Tomato	nucleus	43.46	49.0
TraesCS7D01G207200.1	Wheat	nucleus	51.59	48.51
TraesCS7A01G204100.1	Wheat	nucleus	51.24	48.17
HORVU7Hr1G041520.2	Barley	nucleus	51.24	48.17
TraesCS7B01G111100.1	Wheat	nucleus	50.88	47.84
EER89547	Sorghum	nucleus	51.59	47.56
Solyc10g086400.1.1	Tomato	nucleus	38.16	45.19
Zm00001d037352_P001	Maize	plasma membrane	48.41	44.77
HORVU2Hr1G011700.2	Barley	nucleus	52.65	44.35

Protein Annotations

MapMan:16.11.1.2	Gene3D:3.30.70.330	InterPro:FoP_C	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:K4D5S0	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF13865	PFscan:PS50102	PANTHER:PTHR19965	PANTHER:PTHR19965:SF33	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SMART:SM01218	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc11g011130.1	EnsemblPlants:Solyc11g011130.1.1	UniParc:UPI000276991C
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr11:-:4210363..4214352

Molecular Weight (calculated)

30135.6 Da

IEP (calculated)

11.989

GRAVY (calculated)

-0.772

Length

283 amino acids

Sequence
(BLAST)

001: MASLDMTLDD MIKSRRNTER GGRGQGRARR GRGAGGSFRG GSFRGGRTTG APRRGPLGVN ARPSAYTIAK TFRRTKNLPW QNGLFEDSLR AAGLSSVLES
101: GTKLYVSNLD VGVTNEDIRE LFSEMGELVR FAIHYDKNGR PSGAAEVVFA RRSDAFQALK RYNNVQLDGK PMKIEIVGSN PEIPLSARVN VVGGTNRRRT
201: VVMAPGGPAR GRGAATSRGS SQRGRGGLRN APGRGRGGGG GRGWGRGRGR GGRGSSSRGA DKSAEDLDKE LDSYHANADA MQT

Best Arabidopsis Sequence Match ( AT5G37720.2 )
(BLAST)

001: MSGALNMTLD EIVKRGKTAR SGGRGISRGR GRGRGGGGRG AGPARRGPLA VNARPSSFTI NKPVRRVRSL PWQSGLFEDG LRAAGASGVE VGTRLHVTNL
101: DQGVTNEDIR ELFSEIGEVE RYAIHYDKNG RPSGTAEVVY PRRSDAFQAL KKYNNVLLDG RPMRLEILGG NNSSEAPLSG RVNVNVTGLN GRLKRTVVIQ
201: VRGGRGGRGP APTVSRRLPI HNQQGGGMRG GRGGFRARGR GNGGRGRGGG RGNGKKPVEK SAADLDKDLE SYHADAMNTS

Arabidopsis Description

ALY4THO complex subunit 4D [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.