CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050357_P005	Maize	plasma membrane	97.06	98.14
Os08t0427900-01	Rice	nucleus	88.24	83.92
TraesCS2B01G073800.1	Wheat	nucleus	85.66	83.51
TraesCS2A01G060200.1	Wheat	nucleus	84.56	82.73
TraesCS2D01G059800.1	Wheat	nucleus	85.29	82.56
HORVU2Hr1G011700.2	Barley	nucleus	84.56	68.45
GSMUA_Achr5P05950_001	Banana	nucleus	60.66	60.44
GSMUA_Achr2P18730_001	Banana	nucleus	63.97	56.68
VIT_14s0006g01020.t01	Wine grape	nucleus	55.51	56.13
PGSC0003DMT400040562	Potato	nucleus	54.41	52.48
Solyc11g011130.1.1	Tomato	nucleus	54.41	52.3
Solyc04g014460.2.1	Tomato	nucleus	52.21	52.21
PGSC0003DMT400060737	Potato	nucleus	51.47	50.72
KRG97938	Soybean	nucleus	55.15	50.34
KRH30937	Soybean	nucleus	54.04	49.33
EER89547	Sorghum	nucleus	54.78	48.53
AT5G37720.1	Thale cress	nucleus	47.79	45.14
CDY01711	Canola	nucleus	48.53	45.05
CDY49635	Canola	nucleus, plastid	45.96	43.4
Bra004158.1-P	Field mustard	nucleus, plastid	45.96	43.4
CDY07496	Canola	nucleus, plastid	45.96	43.4
AT1G66260.1	Thale cress	nucleus	46.32	42.71
CDX74565	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	40.81	42.69
Bra028145.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	40.81	42.69
EER92463	Sorghum	nucleus	39.34	41.63
EER98238	Sorghum	nucleus, plastid	33.09	35.29
OQU75650	Sorghum	nucleus	17.28	27.49

Protein Annotations

MapMan:16.11.1.2	Gene3D:3.30.70.330	EntrezGene:8075639	UniProt:C5YL34	EnsemblPlants:EES15014	ProteinID:EES15014
ProteinID:EES15014.1	InterPro:FoP_C	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR19965
PANTHER:PTHR19965:SF33	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM01218	EnsemblPlantsGene:SORBI_3007G132400
SUPFAM:SSF54928	unigene:Sbi.1792	UniParc:UPI0001A87B0C	RefSeq:XP_002445519.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:-:55215979..55221527

Molecular Weight (calculated)

29763.1 Da

IEP (calculated)

11.503

GRAVY (calculated)

-0.851

Length

272 amino acids

Sequence
(BLAST)

001: MSYYERRGGD RGSGRIQGSG GRGGHVLRGR SGLPPRGPLG VNSRPSARTI AKSFSRTKDM TWRPDLFSDS MAASGIETGT KLYISNLDYG VSNEDIKELF
101: SEVGHLKRFA VHYDGYGRPN GTAEVVFTRR SDAIAALKRY NNVLLDGKAM KIEVIGSDLG LPMTPRINVV GASNGRATRT VVMTPEFSQR GRGSSSRPLS
201: NPSNRFNNRG GFQAGRGRGQ FQARGRGRGQ FQSRGRGRGQ FQGRGRGRKP EKTADELDKD LESYHAEAMK TD

Best Arabidopsis Sequence Match ( AT5G37720.1 )
(BLAST)

001: MSGALNMTLD EIVKRGKTAR SGGRGISRGR GRGRGGGGRG AGPARRGPLA VNARPSSFTI NKPVRRVRSL PWQSGLFEDG LRAAGASGVE VGTRLHVTNL
101: DQGVTNEDIR ELFSEIGEVE RYAIHYDKNG RPSGTAEVVY PRRSDAFQAL KKYNNVLLDG RPMRLEILGG NNSSEAPLSG RVNVNVTGLN GRLKRTVVIQ
201: QGGGGRGRVR GGRGGRGPAP TVSRRLPIHN QQGGGMRGGR GGFRARGRGN GGRGRGGGRG NGKKPVEKSA ADLDKDLESY HADAMNTS

Arabidopsis Description

ALY4THO complex subunit 4D [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.