Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004158.1-P | Field mustard | nucleus, plastid | 73.9 | 75.69 |
| CDY07496 | Canola | nucleus, plastid | 73.9 | 75.69 |
| CDY49635 | Canola | nucleus, plastid | 73.9 | 75.69 |
| AT5G37720.1 | Thale cress | nucleus | 70.85 | 72.57 |
| VIT_14s0006g01020.t01 | Wine grape | nucleus | 53.22 | 58.36 |
| PGSC0003DMT400060737 | Potato | nucleus | 52.88 | 56.52 |
| Solyc04g014460.2.1 | Tomato | nucleus | 51.86 | 56.25 |
| Solyc11g011130.1.1 | Tomato | nucleus | 52.88 | 55.12 |
| PGSC0003DMT400040562 | Potato | nucleus | 52.54 | 54.96 |
| KRG97938 | Soybean | nucleus | 54.92 | 54.36 |
| KRH30937 | Soybean | nucleus | 54.58 | 54.03 |
| GSMUA_Achr5P05950_001 | Banana | nucleus | 44.07 | 47.62 |
| Zm00001d050357_P005 | Maize | plasma membrane | 42.71 | 46.84 |
| EES15014 | Sorghum | nucleus | 42.71 | 46.32 |
| GSMUA_Achr2P18730_001 | Banana | nucleus | 47.12 | 45.28 |
| TraesCS2B01G073800.1 | Wheat | nucleus | 42.37 | 44.8 |
| TraesCS2A01G060200.1 | Wheat | nucleus | 41.69 | 44.24 |
| TraesCS2D01G059800.1 | Wheat | nucleus | 42.03 | 44.13 |
| AT5G59950.5 | Thale cress | nucleus | 36.61 | 44.08 |
| Os06t0256200-01 | Rice | nucleus | 42.71 | 42.86 |
| Os08t0427900-01 | Rice | nucleus | 41.02 | 42.31 |
| TraesCS7A01G204100.1 | Wheat | nucleus | 41.36 | 40.53 |
| TraesCS7B01G111100.1 | Wheat | nucleus | 41.36 | 40.53 |
| TraesCS7D01G207200.1 | Wheat | nucleus | 41.02 | 40.2 |
| EER89547 | Sorghum | nucleus | 41.69 | 40.07 |
| HORVU7Hr1G041520.2 | Barley | nucleus | 40.68 | 39.87 |
| AT5G02530.1 | Thale cress | plastid | 39.32 | 39.73 |
| HORVU2Hr1G011700.2 | Barley | nucleus | 42.03 | 36.9 |
| Zm00001d037352_P001 | Maize | plasma membrane | 36.61 | 35.29 |
Protein Annotations
| MapMan:16.11.1.2 | Gene3D:3.30.70.330 | EntrezGene:842943 | ProteinID:AAG51767.1 | ProteinID:AEE34486.1 | ProteinID:AEE34487.1 |
| EMBL:AF410310 | EMBL:AJ278492 | ArrayExpress:AT1G66260 | EnsemblPlantsGene:AT1G66260 | RefSeq:AT1G66260 | TAIR:AT1G66260 |
| RefSeq:AT1G66260-TAIR-G | EnsemblPlants:AT1G66260.1 | TAIR:AT1G66260.1 | EMBL:AY149925 | Unigene:At.25606 | InterPro:FoP_C |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005730 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0051028 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_001185329.1 | RefSeq:NP_564871.1 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF13865 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS50102 | PANTHER:PTHR19965 | PANTHER:PTHR19965:SF33 | UniProt:Q94EH8 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SMART:SM01218 | SUPFAM:SSF54928 | UniParc:UPI00000AC696 | SEG:seg |
Description
ALY3THO complex subunit 4C [Source:UniProtKB/Swiss-Prot;Acc:Q94EH8]
Coordinates
chr1:-:24695637..24698484
Molecular Weight (calculated)
31320.3 Da
IEP (calculated)
11.496
GRAVY (calculated)
-0.746
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDALNMTLD EIVKKSKSER SAAARSGGKG VSRKSGRGRG GPNGVVGGGR GGGPVRRGPL AVNTRPSSSF SINKLARRKR SLPWQNQNDL YEETLRAVGV
101: SGVEVGTTVY ITNLDQGVTN EDIRELYAEI GELKRYAIHY DKNGRPSGSA EVVYMRRSDA IQAMRKYNNV LLDGRPMKLE ILGGNTESAP VAARVNVTGL
201: NGRMKRSVFI GQGVRGGRVG RGRGSGPSGR RLPLQQNQQG GVTAGRGGFR GRGRGNGGGR GNKSGGRGGK KPVEKSAADL DKDLESYHAE AMNIS
101: SGVEVGTTVY ITNLDQGVTN EDIRELYAEI GELKRYAIHY DKNGRPSGSA EVVYMRRSDA IQAMRKYNNV LLDGRPMKLE ILGGNTESAP VAARVNVTGL
201: NGRMKRSVFI GQGVRGGRVG RGRGSGPSGR RLPLQQNQQG GVTAGRGGFR GRGRGNGGGR GNKSGGRGGK KPVEKSAADL DKDLESYHAE AMNIS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.