Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020273.1-P | Field mustard | nucleus | 76.73 | 86.24 |
| Bra002519.1-P | Field mustard | nucleus | 83.67 | 86.13 |
| CDX80213 | Canola | nucleus | 82.45 | 85.96 |
| CDY31583 | Canola | nucleus | 83.67 | 85.77 |
| CDY09236 | Canola | nucleus | 75.92 | 85.32 |
| VIT_06s0004g04340.t01 | Wine grape | nucleus | 65.31 | 65.84 |
| GSMUA_AchrUn_... | Banana | nucleus | 61.22 | 62.76 |
| GSMUA_Achr6P23530_001 | Banana | nucleus | 60.82 | 62.34 |
| KRH24828 | Soybean | nucleus | 36.33 | 62.24 |
| GSMUA_Achr10P... | Banana | nucleus | 60.41 | 61.92 |
| KRH23040 | Soybean | plastid | 61.22 | 61.73 |
| KRH29829 | Soybean | nucleus | 60.0 | 59.51 |
| Solyc11g073280.1.1 | Tomato | nucleus | 60.82 | 59.36 |
| VIT_13s0019g00640.t01 | Wine grape | cytosol | 36.33 | 55.62 |
| Solyc10g086400.1.1 | Tomato | nucleus | 53.88 | 55.23 |
| PGSC0003DMT400049444 | Potato | cytosol | 55.1 | 54.66 |
| PGSC0003DMT400085575 | Potato | nucleus, plastid | 48.16 | 54.38 |
| EER92463 | Sorghum | nucleus | 55.92 | 53.31 |
| Os11t0100200-00 | Rice | nucleus | 47.35 | 52.97 |
| Os12t0100100-01 | Rice | nucleus, plastid | 48.98 | 52.63 |
| Zm00001d028655_P001 | Maize | extracellular, mitochondrion | 54.29 | 52.57 |
| Os03t0278300-02 | Rice | nucleus | 58.37 | 52.38 |
| AT5G02530.1 | Thale cress | plastid | 62.04 | 52.05 |
| TraesCS4A01G099300.1 | Wheat | nucleus | 54.29 | 50.76 |
| PGSC0003DMT400049442 | Potato | nucleus | 46.53 | 50.44 |
| TraesCS4B01G205000.1 | Wheat | nucleus | 54.69 | 49.63 |
| TraesCS4D01G205900.1 | Wheat | nucleus | 53.88 | 48.89 |
| GSMUA_Achr6P15310_001 | Banana | nucleus | 45.71 | 47.66 |
| TraesCS5D01G163300.1 | Wheat | nucleus | 51.02 | 45.29 |
| TraesCS5A01G157900.1 | Wheat | nucleus | 51.02 | 45.29 |
| HORVU5Hr1G049430.2 | Barley | nucleus | 51.84 | 45.2 |
| TraesCS5B01G155800.1 | Wheat | nucleus | 51.02 | 45.13 |
| TraesCS4A01G178200.1 | Wheat | nucleus, plastid | 46.94 | 44.23 |
| TraesCS4B01G138300.1 | Wheat | nucleus, plastid | 48.16 | 44.03 |
| TraesCS4D01G133000.1 | Wheat | plastid | 46.12 | 43.46 |
| Zm00001d047794_P001 | Maize | nucleus | 44.9 | 43.31 |
| Zm00001d019234_P002 | Maize | extracellular | 42.86 | 42.17 |
| KRH75241 | Soybean | plastid | 22.86 | 42.11 |
| EER98238 | Sorghum | nucleus, plastid | 42.45 | 40.78 |
| KRH07006 | Soybean | cytosol | 17.96 | 40.74 |
| Zm00001d005179_P001 | Maize | plastid | 32.65 | 38.28 |
| HORVU4Hr1G024270.1 | Barley | plastid | 47.76 | 38.24 |
| AT5G37720.1 | Thale cress | nucleus | 43.27 | 36.81 |
| AT1G66260.1 | Thale cress | nucleus | 44.08 | 36.61 |
| TraesCS2D01G240400.1 | Wheat | nucleus, plastid | 40.0 | 36.43 |
| TraesCS2B01G261300.1 | Wheat | nucleus, plastid | 40.0 | 36.3 |
| KRH70494 | Soybean | nucleus | 38.78 | 35.71 |
| HORVU4Hr1G059090.4 | Barley | plastid | 50.2 | 34.75 |
| TraesCS2A01G244000.1 | Wheat | nucleus | 32.24 | 34.35 |
| OQU75650 | Sorghum | nucleus | 23.67 | 33.92 |
| Os07t0237100-00 | Rice | nucleus | 42.86 | 30.88 |
| KRH01617 | Soybean | nucleus | 25.31 | 30.54 |
| HORVU2Hr1G056980.6 | Barley | nucleus | 26.12 | 20.45 |
Protein Annotations
| MapMan:16.11.1.2 | Gene3D:3.30.70.330 | EntrezGene:836117 | ProteinID:AED97257.1 | ProteinID:AED97258.1 | ArrayExpress:AT5G59950 |
| EnsemblPlantsGene:AT5G59950 | RefSeq:AT5G59950 | TAIR:AT5G59950 | RefSeq:AT5G59950-TAIR-G | EnsemblPlants:AT5G59950.5 | TAIR:AT5G59950.5 |
| Unigene:At.23634 | UniProt:F4JXE3 | InterPro:FoP_C | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_001119461.1 | RefSeq:NP_001190572.1 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF13865 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS50102 | PANTHER:PTHR19965 | PANTHER:PTHR19965:SF51 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SMART:SM01218 | SUPFAM:SSF54928 | UniParc:UPI0001E93093 | SEG:seg | : |
Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JXE3]
Coordinates
chr5:+:24139939..24141867
Molecular Weight (calculated)
25843.9 Da
IEP (calculated)
10.390
GRAVY (calculated)
-1.034
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTGLDMSLD DMIAKNRKSR GGAGPARGTG SGSGPGPTRR NNPNRKSTRS APYQSAKAPE STWGHDMFSD RSEDHRSGRS SAGIETGTKL YISNLDYGVM
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWSRG GQGRGGQQRG
201: GGRGGGGRGG GGRGRRPGKG PAEKISAEDL DADLDKYHSG DMETN
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWSRG GQGRGGQQRG
201: GGRGGGGRGG GGRGRRPGKG PAEKISAEDL DADLDKYHSG DMETN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.