Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d005179_P001 | |
| Zm00001d019234_P002 | |
| Zm00001d028655_P001 | |
| Zm00001d047794_P001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d019234_P002 | Maize | extracellular | 86.6 | 72.69 |
| EER98238 | Sorghum | nucleus, plastid | 87.56 | 71.76 |
| TraesCS2A01G244000.1 | Wheat | nucleus | 66.51 | 60.43 |
| TraesCS2D01G240400.1 | Wheat | nucleus, plastid | 66.51 | 51.67 |
| TraesCS2B01G261300.1 | Wheat | nucleus, plastid | 66.51 | 51.48 |
| KRH24828 | Soybean | nucleus | 31.1 | 45.45 |
| Os07t0237100-00 | Rice | nucleus | 64.59 | 39.71 |
| VIT_13s0019g00640.t01 | Wine grape | cytosol | 28.23 | 36.88 |
| VIT_06s0004g04340.t01 | Wine grape | nucleus | 41.63 | 35.8 |
| Bra020273.1-P | Field mustard | nucleus | 35.89 | 34.4 |
| CDY09236 | Canola | nucleus | 35.41 | 33.95 |
| Solyc10g086400.1.1 | Tomato | nucleus | 38.28 | 33.47 |
| KRH23040 | Soybean | plastid | 38.76 | 33.33 |
| KRH07006 | Soybean | cytosol | 17.22 | 33.33 |
| KRH29829 | Soybean | nucleus | 39.23 | 33.2 |
| PGSC0003DMT400049444 | Potato | cytosol | 39.23 | 33.2 |
| CDY31583 | Canola | nucleus | 37.8 | 33.05 |
| Bra002519.1-P | Field mustard | nucleus | 37.32 | 32.77 |
| CDX80213 | Canola | nucleus | 36.84 | 32.77 |
| AT5G59950.5 | Thale cress | nucleus | 38.28 | 32.65 |
| Bra009581.1-P | Field mustard | nucleus | 42.11 | 31.88 |
| Solyc11g073280.1.1 | Tomato | nucleus | 38.28 | 31.87 |
| CDX80828 | Canola | nucleus | 44.02 | 31.83 |
| CDY40364 | Canola | nucleus | 42.11 | 31.77 |
| Zm00001d050357_P005 | Maize | plasma membrane | 40.67 | 31.6 |
| Zm00001d028655_P001 | Maize | extracellular, mitochondrion | 37.8 | 31.23 |
| CDY10442 | Canola | nucleus | 41.15 | 30.82 |
| CDY55544 | Canola | nucleus | 43.06 | 30.82 |
| AT5G02530.1 | Thale cress | plastid | 41.63 | 29.79 |
| PGSC0003DMT400049442 | Potato | nucleus | 30.62 | 28.32 |
| HORVU2Hr1G056980.6 | Barley | nucleus | 42.11 | 28.11 |
| PGSC0003DMT400085575 | Potato | nucleus, plastid | 28.23 | 27.19 |
| Bra005728.1-P | Field mustard | nucleus, plastid | 42.11 | 26.35 |
| KRH70494 | Soybean | nucleus | 33.49 | 26.32 |
| Zm00001d047794_P001 | Maize | nucleus | 30.62 | 25.2 |
| Zm00001d037352_P001 | Maize | plasma membrane | 33.49 | 22.88 |
| KRH01617 | Soybean | nucleus | 20.1 | 20.69 |
| KRH75241 | Soybean | plastid | 11.96 | 18.8 |
Protein Annotations
| MapMan:16.11.1.2 | Gene3D:3.30.70.330 | UniProt:A0A1D6EKY6 | InterPro:FoP_C | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:ONM20553.1 |
| PFAM:PF00076 | PFAM:PF13865 | PFscan:PS50102 | PANTHER:PTHR19965 | PANTHER:PTHR19965:SF26 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SMART:SM01218 | SUPFAM:SSF54928 | UniParc:UPI0008456688 | EnsemblPlantsGene:Zm00001d005179 |
| EnsemblPlants:Zm00001d005179_P001 | EnsemblPlants:Zm00001d005179_T001 | SEG:seg | : | : | : |
Description
THO complex subunit 4B
Coordinates
chr2:+:162701249..162708553
Molecular Weight (calculated)
22644.6 Da
IEP (calculated)
9.553
GRAVY (calculated)
-0.727
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTRPAQARA TADSPYGVYS EQIAAIAAAA PLPAKARSLE TGMKLHISNL DSGVTVEDVQ ELFSEVGELK RYSMNYDKDG RSKGTAEVVF ARKVDALDAI
101: KRYNGVLLDG KPMNLELIGN NVEPPPLPPL IHNRPLQNYN DIHSSVLQSQ RNGQRRAPQV NGRGGRSSQT SGGRGQGRGR GQDRNRTPIS ASDLDAELDK
201: YHAAAAKEE
101: KRYNGVLLDG KPMNLELIGN NVEPPPLPPL IHNRPLQNYN DIHSSVLQSQ RNGQRRAPQV NGRGGRSSQT SGGRGQGRGR GQDRNRTPIS ASDLDAELDK
201: YHAAAAKEE
001: MSGGLDMSLD DIIKSNRKPT GSRGRGGIGG GNNTGGRGGS GSNSGPSRRF ANRVGARTAP YSRPIQQQQA HDAMWQNDVF ATDASVAAAF GHHQTAVVGG
101: GSSIETGTKL YISNLDYGVS NEDIKELFSE VGDLKRYGIH YDRSGRSKGT AEVVFSRRGD ALAAVKRYNN VQLDGKLMKI EIVGTNLSAP ALPILATAQI
201: PFPTNGILGN FNENFNGNFN GNFNGNFRGR GGFMGRPRGG GFGGGNFRGG RGARGRGGRG SGGRGRDENV SAEDLDAELD KYHKEAMETS
101: GSSIETGTKL YISNLDYGVS NEDIKELFSE VGDLKRYGIH YDRSGRSKGT AEVVFSRRGD ALAAVKRYNN VQLDGKLMKI EIVGTNLSAP ALPILATAQI
201: PFPTNGILGN FNENFNGNFN GNFNGNFRGR GGFMGRPRGG GFGGGNFRGG RGARGRGGRG SGGRGRDENV SAEDLDAELD KYHKEAMETS
Arabidopsis Description
ALY2THO complex subunit 4B [Source:UniProtKB/Swiss-Prot;Acc:Q8L719]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.