Factsheet for Bra005728.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005728.1-P
Bra009581.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02530.1	Bra005728.1-P	AT5G02530.1	21798944
AT5G02530.1	Bra009581.1-P	AT5G02530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55544	Canola	nucleus	84.13	96.23
CDX80828	Canola	nucleus	81.44	94.12
AT5G02530.1	Thale cress	plastid	75.15	85.96
Bra009581.1-P	Field mustard	nucleus	70.96	85.87
KRH24828	Soybean	nucleus	27.84	65.03
VIT_06s0004g04340.t01	Wine grape	nucleus	47.31	65.02
GSMUA_Achr6P23530_001	Banana	nucleus	45.21	63.18
Solyc11g073280.1.1	Tomato	nucleus	47.31	62.95
GSMUA_Achr10P...	Banana	nucleus	44.91	62.76
Bra020273.1-P	Field mustard	nucleus	40.72	62.39
KRH29829	Soybean	nucleus	45.51	61.54
GSMUA_AchrUn_...	Banana	nucleus	44.01	61.51
KRH23040	Soybean	plastid	44.61	61.32
Bra002519.1-P	Field mustard	nucleus	43.41	60.92
VIT_13s0019g00640.t01	Wine grape	cytosol	28.44	59.38
PGSC0003DMT400085575	Potato	nucleus, plastid	38.02	58.53
Os11t0100200-00	Rice	nucleus	37.13	56.62
Solyc10g086400.1.1	Tomato	nucleus	40.42	56.49
Os12t0100100-01	Rice	nucleus, plastid	38.32	56.14
PGSC0003DMT400049444	Potato	cytosol	41.02	55.47
EER92463	Sorghum	nucleus	40.72	52.92
Zm00001d028655_P001	Maize	extracellular, mitochondrion	39.22	51.78
GSMUA_Achr6P15310_001	Banana	nucleus	36.23	51.49
Os03t0278300-02	Rice	nucleus	41.92	51.28
PGSC0003DMT400049442	Potato	nucleus	34.13	50.44
TraesCS4A01G099300.1	Wheat	nucleus	38.32	48.85
TraesCS5D01G163300.1	Wheat	nucleus	40.12	48.55
HORVU5Hr1G049430.2	Barley	nucleus	40.72	48.4
TraesCS4B01G205000.1	Wheat	nucleus	38.92	48.15
TraesCS5A01G157900.1	Wheat	nucleus	39.52	47.83
TraesCS5B01G155800.1	Wheat	nucleus	39.52	47.65
TraesCS4D01G205900.1	Wheat	nucleus	38.32	47.41
KRH75241	Soybean	plastid	18.86	47.37
TraesCS4D01G133000.1	Wheat	plastid	35.63	45.77
TraesCS4A01G178200.1	Wheat	nucleus, plastid	35.63	45.77
Zm00001d047794_P001	Maize	nucleus	34.43	45.28
TraesCS4B01G138300.1	Wheat	nucleus, plastid	36.23	45.15
Zm00001d019234_P002	Maize	extracellular	32.93	44.18
EER98238	Sorghum	nucleus, plastid	32.93	43.14
KRH07006	Soybean	cytosol	13.77	42.59
Zm00001d005179_P001	Maize	plastid	26.35	42.11
TraesCS2D01G240400.1	Wheat	nucleus, plastid	32.34	40.15
TraesCS2B01G261300.1	Wheat	nucleus, plastid	32.34	40.0
HORVU4Hr1G024270.1	Barley	plastid	36.53	39.87
TraesCS2A01G244000.1	Wheat	nucleus	26.05	37.83
KRH70494	Soybean	nucleus	29.64	37.22
Bra004158.1-P	Field mustard	nucleus, plastid	30.84	35.76
Bra028145.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	26.65	34.23
Os07t0237100-00	Rice	nucleus	34.13	33.53
OQU75650	Sorghum	nucleus	16.77	32.75
HORVU4Hr1G059090.4	Barley	plastid	34.43	32.49
KRH01617	Soybean	nucleus	18.56	30.54
HORVU2Hr1G056980.6	Barley	nucleus	20.96	22.36

Protein Annotations

MapMan:16.11.1.2	MapMan:18.1.1.5.4	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra005728	EnsemblPlants:Bra005728.1	EnsemblPlants:Bra005728.1-P
InterPro:FoP_C	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:IPR000504	InterPro:IPR012677	UniProt:M4CNE0	InterPro:Nucleotide-bd_a/b_plait_sf
InterPro:Oligosaccaryltransferase	InterPro:Ost4p_sf	PFAM:PF00076	PFAM:PF10215	PFscan:PS50102	PANTHER:PTHR19965
PANTHER:PTHR19965:SF51	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM01218	SUPFAM:SSF103464
SUPFAM:SSF54928	TMHMM:TMhelix	UniParc:UPI000253FAAD	SEG:seg	:	:

Description

AT5G02530 (E=1e-081) | RNA and export factor-binding protein, putative

Coordinates

chrA03:-:317206..319698

Molecular Weight (calculated)

35318.5 Da

IEP (calculated)

10.143

GRAVY (calculated)

-0.426

Length

334 amino acids

Sequence
(BLAST)

001: MAGGLDMSLD DLIKSNRKPT GSRGRGNGGA SSGGRGFGGG SSGPSRRFAN RVGNRTAPYS RPIQQQAHDA MWANDVFATD ASVAAAFGHQ SAGVGVGGSS
101: IETGTKLYIS NLDYGVSNED IKELFSEVGD LKRYGIHYDR SGRSKGTAEV VFSRRGDALA AVKRYNDVQL DGKLMKIEIV GTNLSAPAPP MLAPVQIPFP
201: SNGILGNFNE NYNGNFNGNF NGNFRGRGRG GFMGRPRGGF GGGNFRGGRG ARGGGGGGRG SGRGGRDEKV SAEDLDAELD KLSLSEESKR KVIVPALPKM
301: FDDQDLGFFA NFLGIFIFIL VIAYHFVVAD PKFE

Best Arabidopsis Sequence Match ( AT5G02530.1 )
(BLAST)

001: MSGGLDMSLD DIIKSNRKPT GSRGRGGIGG GNNTGGRGGS GSNSGPSRRF ANRVGARTAP YSRPIQQQQA HDAMWQNDVF ATDASVAAAF GHHQTAVVGG
101: GSSIETGTKL YISNLDYGVS NEDIKELFSE VGDLKRYGIH YDRSGRSKGT AEVVFSRRGD ALAAVKRYNN VQLDGKLMKI EIVGTNLSAP ALPILATAQI
201: PFPTNGILGN FNENFNGNFN GNFNGNFRGR GRGGFMGRPR GGGFGGGNFR GGRGARGRGG RGSGGRGRDE NVSAEDLDAE LDKYHKEAME TS

Arabidopsis Description

ALY2THO complex subunit 4B [Source:UniProtKB/Swiss-Prot;Acc:Q8L719]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.