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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 3
  • nucleus 3
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5A01G157900.1 Wheat nucleus 99.64 100.0
TraesCS5D01G163300.1 Wheat nucleus 98.56 98.91
HORVU5Hr1G049430.2 Barley nucleus 94.22 92.88
Os11t0100200-00 Rice nucleus 59.57 75.34
Os12t0100100-01 Rice nucleus, plastid 60.29 73.25
KRH24828 Soybean nucleus 32.13 62.24
TraesCS4B01G138300.1 Wheat nucleus, plastid 58.48 60.45
VIT_06s0004g04340.t01 Wine grape nucleus 51.62 58.85
KRH29829 Soybean nucleus 50.54 56.68
KRH23040 Soybean plastid 49.46 56.38
Solyc10g086400.1.1 Tomato nucleus 48.01 55.65
VIT_13s0019g00640.t01 Wine grape cytosol 32.13 55.62
Solyc11g073280.1.1 Tomato nucleus 49.82 54.98
PGSC0003DMT400049444 Potato cytosol 46.93 52.63
Bra020273.1-P Field mustard nucleus 40.43 51.38
AT5G59950.5 Thale cress nucleus 45.13 51.02
CDX80213 Canola nucleus 42.96 50.64
CDY09236 Canola nucleus 39.71 50.46
CDY10442 Canola nucleus 50.54 50.18
Bra002519.1-P Field mustard nucleus 42.96 50.0
CDY31583 Canola nucleus 42.96 49.79
Bra009581.1-P Field mustard nucleus 49.46 49.64
CDY40364 Canola nucleus 49.1 49.1
PGSC0003DMT400085575 Potato nucleus, plastid 37.91 48.39
AT5G02530.1 Thale cress plastid 50.54 47.95
PGSC0003DMT400049442 Potato nucleus 38.99 47.79
CDX80828 Canola nucleus 49.46 47.4
CDY55544 Canola nucleus 49.46 46.92
TraesCS4B01G205000.1 Wheat nucleus 45.13 46.3
TraesCS2B01G261300.1 Wheat nucleus, plastid 38.99 40.0
KRH07006 Soybean cytosol 15.52 39.81
Bra005728.1-P Field mustard nucleus, plastid 47.65 39.52
TraesCS2B01G073800.1 Wheat nucleus 37.91 37.63
KRH75241 Soybean plastid 17.69 36.84
TraesCS7B01G111100.1 Wheat nucleus 39.35 36.21
KRH70494 Soybean nucleus 33.57 34.96
OQU75650 Sorghum nucleus 20.58 33.33
KRH01617 Soybean nucleus 24.19 33.0
Protein Annotations
EnsemblPlants:TraesCS5B01G155800.1EnsemblPlantsGene:TraesCS5B01G155800Gene3D:3.30.70.330GO:GO:0003674GO:GO:0003676GO:GO:0005488
InterPro:FoP_CInterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sfInterPro:RBD_domain_sfInterPro:RRM_dom
PANTHER:PTHR19965PANTHER:PTHR19965:SF50PFAM:PF00076PFAM:PF13865PFscan:PS50102SEG:seg
SMART:SM00360SMART:SM01218SUPFAM:SSF54928TIGR:cd12680MapMan:16.11.1.2:
Description
No Description!
Coordinates
chr5B:+:287794758..287797017
Molecular Weight (calculated)
29030.9 Da
IEP (calculated)
10.620
GRAVY (calculated)
-0.645
Length
277 amino acids
Sequence
(BLAST)
001: MADALDMSLD DLISKNKSSS QRGRGRRNPA SGSGSGSASG GPAPAGRRFQ ARAATRAAAA PYHQFNFPPP APAAFAYAAQ QAHAHAHAQV MAMVAPPTGV
101: ETGTKLYISN LDYNVSNEDI KELFAEVGDL KRYSINYDKS GRSKGTAEVI FSRKSDALAA LKRYNNVQLD GKPMKIEVIG TNIEAPPPPP AIFTLNTPTI
201: GNFIPSYSGG RGRGGDGGRG WPRGRGGFGG RSAAGRGRGR GDVGRGRGRG GRGSQPVSAN DLDADLDKYH SEAMQTS
Best Arabidopsis Sequence Match ( AT5G02530.1 )
(BLAST)
001: MSGGLDMSLD DIIKSNRKPT GSRGRGGIGG GNNTGGRGGS GSNSGPSRRF ANRVGARTAP YSRPIQQQQA HDAMWQNDVF ATDASVAAAF GHHQTAVVGG
101: GSSIETGTKL YISNLDYGVS NEDIKELFSE VGDLKRYGIH YDRSGRSKGT AEVVFSRRGD ALAAVKRYNN VQLDGKLMKI EIVGTNLSAP ALPILATAQI
201: PFPTNGILGN FNENFNGNFN GNFNGNFRGR GRGGFMGRPR GGGFGGGNFR GGRGARGRGG RGSGGRGRDE NVSAEDLDAE LDKYHKEAME TS
Arabidopsis Description
ALY2THO complex subunit 4B [Source:UniProtKB/Swiss-Prot;Acc:Q8L719]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.