Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G02530.1 | EER92463 | AT5G02530.1 | 21798944 |
AT5G02530.1 | EER98238 | AT5G02530.1 | 21798944 |
AT5G02530.1 | OQU75650 | AT5G02530.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_13s0019g00640.t01 | Wine grape | cytosol | 32.16 | 34.38 |
VIT_06s0004g04340.t01 | Wine grape | nucleus | 37.43 | 26.34 |
Bra020273.1-P | Field mustard | nucleus | 33.33 | 26.15 |
CDY09236 | Canola | nucleus | 33.33 | 26.15 |
PGSC0003DMT400049442 | Potato | nucleus | 33.92 | 25.66 |
Os11t0100200-00 | Rice | nucleus | 31.58 | 24.66 |
Os12t0100100-01 | Rice | nucleus, plastid | 32.75 | 24.56 |
PGSC0003DMT400085575 | Potato | nucleus, plastid | 30.99 | 24.42 |
PGSC0003DMT400049444 | Potato | cytosol | 34.5 | 23.89 |
KRH23040 | Soybean | plastid | 33.92 | 23.87 |
AT5G59950.5 | Thale cress | nucleus | 33.92 | 23.67 |
Solyc10g086400.1.1 | Tomato | nucleus | 32.75 | 23.43 |
CDX80213 | Canola | nucleus | 32.16 | 23.4 |
Bra002519.1-P | Field mustard | nucleus | 32.16 | 23.11 |
CDY31583 | Canola | nucleus | 32.16 | 23.01 |
Solyc11g073280.1.1 | Tomato | nucleus | 33.33 | 22.71 |
KRH29829 | Soybean | nucleus | 32.16 | 22.27 |
KRH24828 | Soybean | nucleus | 18.13 | 21.68 |
EER92463 | Sorghum | nucleus | 32.16 | 21.4 |
KRH07006 | Soybean | cytosol | 13.45 | 21.3 |
TraesCS5A01G157900.1 | Wheat | nucleus | 33.33 | 20.65 |
TraesCS5D01G163300.1 | Wheat | nucleus | 33.33 | 20.65 |
Bra009581.1-P | Field mustard | nucleus | 33.33 | 20.65 |
HORVU5Hr1G049430.2 | Barley | nucleus | 33.92 | 20.64 |
TraesCS5B01G155800.1 | Wheat | nucleus | 33.33 | 20.58 |
CDY40364 | Canola | nucleus | 33.33 | 20.58 |
CDY10442 | Canola | nucleus | 33.33 | 20.43 |
AT5G02530.1 | Thale cress | plastid | 33.92 | 19.86 |
CDX80828 | Canola | nucleus | 33.33 | 19.72 |
TraesCS4A01G178200.1 | Wheat | nucleus, plastid | 29.82 | 19.62 |
CDY55544 | Canola | nucleus | 33.33 | 19.52 |
TraesCS4B01G138300.1 | Wheat | nucleus, plastid | 29.82 | 19.03 |
TraesCS4D01G133000.1 | Wheat | plastid | 28.66 | 18.85 |
EER98238 | Sorghum | nucleus, plastid | 27.49 | 18.43 |
EES15014 | Sorghum | nucleus | 27.49 | 17.28 |
Bra005728.1-P | Field mustard | nucleus, plastid | 32.75 | 16.77 |
HORVU4Hr1G024270.1 | Barley | plastid | 29.82 | 16.67 |
KRH75241 | Soybean | plastid | 12.87 | 16.54 |
KRH70494 | Soybean | nucleus | 24.56 | 15.79 |
EER89547 | Sorghum | nucleus | 27.49 | 15.31 |
KRH01617 | Soybean | nucleus | 16.37 | 13.79 |
Protein Annotations
MapMan:16.11.1.2 | Gene3D:3.30.70.330 | UniProt:A0A120GUN6 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | ProteinID:KXG18770.1 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlants:OQU75650 |
ProteinID:OQU75650 | ProteinID:OQU75650.1 | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR19965 | PANTHER:PTHR19965:SF50 |
InterPro:RBD_domain_sf | InterPro:RRM_dom | EnsemblPlantsGene:SORBI_3K010000 | SUPFAM:SSF54928 | UniParc:UPI00076BBFC5 | SEG:seg |
Description
hypothetical protein
Coordinates
chrsuper_120:+:24639..29957
Molecular Weight (calculated)
18138.2 Da
IEP (calculated)
9.466
GRAVY (calculated)
-0.544
Length
171 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSSWLPDLP PSPAAVVAGE ERAWPTPSTC PSTTSSPRAG APTNGPGGEA LPPEAEAEAQ APHPRHRDAA STPVLRQHLT SAAQPSLFQG PCRPSRRWCP
101: LLTSPPSSIA LTSTTGVSNN DIKELFSDVG HIKRYSINCD RSRRSKGTAE VIFSRRSDAL AAVKRYNKCA A
101: LLTSPPSSIA LTSTTGVSNN DIKELFSDVG HIKRYSINCD RSRRSKGTAE VIFSRRSDAL AAVKRYNKCA A
001: MSGGLDMSLD DIIKSNRKPT GSRGRGGIGG GNNTGGRGGS GSNSGPSRRF ANRVGARTAP YSRPIQQQQA HDAMWQNDVF ATDASVAAAF GHHQTAVVGG
101: GSSIETGTKL YISNLDYGVS NEDIKELFSE VGDLKRYGIH YDRSGRSKGT AEVVFSRRGD ALAAVKRYNN VQLDGKLMKI EIVGTNLSAP ALPILATAQI
201: PFPTNGILGN FNENFNGNFN GNFNGNFRGR GGFMGRPRGG GFGGGNFRGG RGARGRGGRG SGGRGRDENV SAEDLDAELD KYHKEAMETS
101: GSSIETGTKL YISNLDYGVS NEDIKELFSE VGDLKRYGIH YDRSGRSKGT AEVVFSRRGD ALAAVKRYNN VQLDGKLMKI EIVGTNLSAP ALPILATAQI
201: PFPTNGILGN FNENFNGNFN GNFNGNFRGR GGFMGRPRGG GFGGGNFRGG RGARGRGGRG SGGRGRDENV SAEDLDAELD KYHKEAMETS
Arabidopsis Description
ALY2THO complex subunit 4B [Source:UniProtKB/Swiss-Prot;Acc:Q8L719]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.