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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • plastid 2
PPI

Inferred distinct locusB in Crop

locusBlocations
EER92463
EER98238
OQU75650

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_13s0019g00640.t01 Wine grape cytosol 32.16 34.38
VIT_06s0004g04340.t01 Wine grape nucleus 37.43 26.34
Bra020273.1-P Field mustard nucleus 33.33 26.15
CDY09236 Canola nucleus 33.33 26.15
PGSC0003DMT400049442 Potato nucleus 33.92 25.66
Os11t0100200-00 Rice nucleus 31.58 24.66
Os12t0100100-01 Rice nucleus, plastid 32.75 24.56
PGSC0003DMT400085575 Potato nucleus, plastid 30.99 24.42
PGSC0003DMT400049444 Potato cytosol 34.5 23.89
KRH23040 Soybean plastid 33.92 23.87
AT5G59950.5 Thale cress nucleus 33.92 23.67
Solyc10g086400.1.1 Tomato nucleus 32.75 23.43
CDX80213 Canola nucleus 32.16 23.4
Bra002519.1-P Field mustard nucleus 32.16 23.11
CDY31583 Canola nucleus 32.16 23.01
Solyc11g073280.1.1 Tomato nucleus 33.33 22.71
KRH29829 Soybean nucleus 32.16 22.27
KRH24828 Soybean nucleus 18.13 21.68
EER92463 Sorghum nucleus 32.16 21.4
KRH07006 Soybean cytosol 13.45 21.3
TraesCS5A01G157900.1 Wheat nucleus 33.33 20.65
TraesCS5D01G163300.1 Wheat nucleus 33.33 20.65
Bra009581.1-P Field mustard nucleus 33.33 20.65
HORVU5Hr1G049430.2 Barley nucleus 33.92 20.64
TraesCS5B01G155800.1 Wheat nucleus 33.33 20.58
CDY40364 Canola nucleus 33.33 20.58
CDY10442 Canola nucleus 33.33 20.43
AT5G02530.1 Thale cress plastid 33.92 19.86
CDX80828 Canola nucleus 33.33 19.72
TraesCS4A01G178200.1 Wheat nucleus, plastid 29.82 19.62
CDY55544 Canola nucleus 33.33 19.52
TraesCS4B01G138300.1 Wheat nucleus, plastid 29.82 19.03
TraesCS4D01G133000.1 Wheat plastid 28.66 18.85
EER98238 Sorghum nucleus, plastid 27.49 18.43
EES15014 Sorghum nucleus 27.49 17.28
Bra005728.1-P Field mustard nucleus, plastid 32.75 16.77
HORVU4Hr1G024270.1 Barley plastid 29.82 16.67
KRH75241 Soybean plastid 12.87 16.54
KRH70494 Soybean nucleus 24.56 15.79
EER89547 Sorghum nucleus 27.49 15.31
KRH01617 Soybean nucleus 16.37 13.79
Protein Annotations
MapMan:16.11.1.2Gene3D:3.30.70.330UniProt:A0A120GUN6GO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0005488InterPro:IPR000504InterPro:IPR012677ProteinID:KXG18770.1InterPro:Nucleotide-bd_a/b_plait_sfEnsemblPlants:OQU75650
ProteinID:OQU75650ProteinID:OQU75650.1PFAM:PF00076PFscan:PS50102PANTHER:PTHR19965PANTHER:PTHR19965:SF50
InterPro:RBD_domain_sfInterPro:RRM_domEnsemblPlantsGene:SORBI_3K010000SUPFAM:SSF54928UniParc:UPI00076BBFC5SEG:seg
Description
hypothetical protein
Coordinates
chrsuper_120:+:24639..29957
Molecular Weight (calculated)
18138.2 Da
IEP (calculated)
9.466
GRAVY (calculated)
-0.544
Length
171 amino acids
Sequence
(BLAST)
001: MGSSWLPDLP PSPAAVVAGE ERAWPTPSTC PSTTSSPRAG APTNGPGGEA LPPEAEAEAQ APHPRHRDAA STPVLRQHLT SAAQPSLFQG PCRPSRRWCP
101: LLTSPPSSIA LTSTTGVSNN DIKELFSDVG HIKRYSINCD RSRRSKGTAE VIFSRRSDAL AAVKRYNKCA A
Best Arabidopsis Sequence Match ( AT5G02530.2 )
(BLAST)
001: MSGGLDMSLD DIIKSNRKPT GSRGRGGIGG GNNTGGRGGS GSNSGPSRRF ANRVGARTAP YSRPIQQQQA HDAMWQNDVF ATDASVAAAF GHHQTAVVGG
101: GSSIETGTKL YISNLDYGVS NEDIKELFSE VGDLKRYGIH YDRSGRSKGT AEVVFSRRGD ALAAVKRYNN VQLDGKLMKI EIVGTNLSAP ALPILATAQI
201: PFPTNGILGN FNENFNGNFN GNFNGNFRGR GGFMGRPRGG GFGGGNFRGG RGARGRGGRG SGGRGRDENV SAEDLDAELD KYHKEAMETS
Arabidopsis Description
ALY2THO complex subunit 4B [Source:UniProtKB/Swiss-Prot;Acc:Q8L719]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.