Factsheet for TraesCS4A01G178200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G244000.1
TraesCS2B01G261300.1
TraesCS2D01G240400.1
TraesCS4A01G099300.1
TraesCS4A01G178200.1
TraesCS4B01G138300.1
TraesCS4B01G205000.1
TraesCS4D01G133000.1
TraesCS4D01G205900.1
TraesCS5A01G157900.1
TraesCS5B01G155800.1
TraesCS5D01G163300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02530.1	TraesCS2A01G244000.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS2B01G261300.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS2D01G240400.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4A01G099300.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4A01G178200.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4B01G138300.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4B01G205000.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4D01G133000.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS4D01G205900.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS5A01G157900.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS5B01G155800.1	AT5G02530.1	21798944
AT5G02530.1	TraesCS5D01G163300.1	AT5G02530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G133000.1	Wheat	plastid	96.92	96.92
TraesCS4B01G138300.1	Wheat	nucleus, plastid	96.92	94.03
HORVU4Hr1G024270.1	Barley	plastid	93.08	79.08
Os11t0100200-00	Rice	nucleus	53.08	63.01
Os12t0100100-01	Rice	nucleus, plastid	52.69	60.09
TraesCS5A01G157900.1	Wheat	nucleus	60.77	57.25
VIT_06s0004g04340.t01	Wine grape	nucleus	48.85	52.26
KRH24828	Soybean	nucleus	28.46	51.75
KRH23040	Soybean	plastid	46.92	50.21
VIT_13s0019g00640.t01	Wine grape	cytosol	30.38	49.38
Solyc10g086400.1.1	Tomato	nucleus	45.0	48.95
Solyc11g073280.1.1	Tomato	nucleus	46.54	48.21
Bra020273.1-P	Field mustard	nucleus	40.38	48.17
CDY09236	Canola	nucleus	39.62	47.25
PGSC0003DMT400049444	Potato	cytosol	44.62	46.96
AT5G59950.5	Thale cress	nucleus	44.23	46.94
KRH29829	Soybean	nucleus	44.23	46.56
CDX80213	Canola	nucleus	41.54	45.96
Bra002519.1-P	Field mustard	nucleus	41.92	45.8
CDY31583	Canola	nucleus	41.92	45.61
CDY10442	Canola	nucleus	47.69	44.44
PGSC0003DMT400049442	Potato	nucleus	38.08	43.81
CDX80828	Canola	nucleus	48.08	43.25
Bra009581.1-P	Field mustard	nucleus	45.77	43.12
CDY40364	Canola	nucleus	45.77	42.96
AT5G02530.1	Thale cress	plastid	47.69	42.47
CDY55544	Canola	nucleus	47.31	42.12
TraesCS4A01G099300.1	Wheat	nucleus	42.31	41.98
PGSC0003DMT400085575	Potato	nucleus, plastid	35.0	41.94
KRH07006	Soybean	cytosol	15.38	37.04
Bra005728.1-P	Field mustard	nucleus, plastid	45.77	35.63
KRH70494	Soybean	nucleus	35.77	34.96
TraesCS2A01G244000.1	Wheat	nucleus	30.38	34.35
TraesCS2A01G060200.1	Wheat	nucleus	36.54	34.17
KRH75241	Soybean	plastid	17.31	33.83
KRH01617	Soybean	nucleus	25.0	32.02
TraesCS7A01G204100.1	Wheat	nucleus	36.54	31.56
OQU75650	Sorghum	nucleus	19.62	29.82

Protein Annotations

EnsemblPlants:TraesCS4A01G178200.1	EnsemblPlantsGene:TraesCS4A01G178200	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:FoP_C	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR19965	PANTHER:PTHR19965:SF50	PFAM:PF00076	PFAM:PF13865	PFscan:PS50102	SEG:seg
SMART:SM00360	SMART:SM01218	SUPFAM:SSF54928	TIGR:cd12680	MapMan:16.11.1.2	:

Description

No Description!

Coordinates

chr4A:+:450762338..450764146

Molecular Weight (calculated)

27669.7 Da

IEP (calculated)

10.476

GRAVY (calculated)

-0.500

Length

260 amino acids

Sequence
(BLAST)

001: MADTLDMSLD DIITKNKHHH RRGRHNPASA ASGGSAHPRR RFRSRAATRA VAAPYHQLSL PQQVPPAFGY VAQPMAMVTA PSALDSPTKL YISNLDYNVS
101: NEDIKELFSE MGEIQRYSIN YDKSGRSKGT AEVVFSARSS AVAALKKYNN VHLDGKPMKI EVIGTNIEAP APIPAIFALA PSPGNFSFPS KSGPGMGVSG
201: RGWSRGGGGF SGRSGGGFGG RGRGRTDRER GKGGGRILEL SAADLDADLD KYHSAAMQIS

Best Arabidopsis Sequence Match ( AT5G02530.2 )
(BLAST)

001: MSGGLDMSLD DIIKSNRKPT GSRGRGGIGG GNNTGGRGGS GSNSGPSRRF ANRVGARTAP YSRPIQQQQA HDAMWQNDVF ATDASVAAAF GHHQTAVVGG
101: GSSIETGTKL YISNLDYGVS NEDIKELFSE VGDLKRYGIH YDRSGRSKGT AEVVFSRRGD ALAAVKRYNN VQLDGKLMKI EIVGTNLSAP ALPILATAQI
201: PFPTNGILGN FNENFNGNFN GNFNGNFRGR GGFMGRPRGG GFGGGNFRGG RGARGRGGRG SGGRGRDENV SAEDLDAELD KYHKEAMETS

Arabidopsis Description

ALY2THO complex subunit 4B [Source:UniProtKB/Swiss-Prot;Acc:Q8L719]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.