Factsheet for Solyc11g073280.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc10g086400.1.1
Solyc11g073280.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02530.1	Solyc10g086400.1.1	AT5G02530.1	21798944
AT5G02530.1	Solyc11g073280.1.1	AT5G02530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400085575	Potato	nucleus, plastid	75.3	87.1
VIT_06s0004g04340.t01	Wine grape	nucleus	70.92	73.25
KRH24828	Soybean	nucleus	40.64	71.33
KRH23040	Soybean	plastid	68.53	70.78
GSMUA_Achr10P...	Banana	nucleus	67.33	70.71
GSMUA_Achr6P23530_001	Banana	nucleus	66.14	69.46
KRH29829	Soybean	nucleus	67.73	68.83
GSMUA_AchrUn_...	Banana	nucleus	65.34	68.62
Bra020273.1-P	Field mustard	nucleus	54.18	62.39
CDX80213	Canola	nucleus	58.17	62.13
CDY09236	Canola	nucleus	53.39	61.47
Solyc10g086400.1.1	Tomato	nucleus	58.17	61.09
CDY31583	Canola	nucleus	58.17	61.09
Bra002519.1-P	Field mustard	nucleus	57.77	60.92
AT5G59950.5	Thale cress	nucleus	59.36	60.82
Os11t0100200-00	Rice	nucleus	49.8	57.08
CDY40364	Canola	nucleus	62.95	57.04
GSMUA_Achr6P15310_001	Banana	nucleus	53.39	57.02
Bra009581.1-P	Field mustard	nucleus	62.55	56.88
EER92463	Sorghum	nucleus	58.17	56.81
Os12t0100100-01	Rice	nucleus, plastid	51.39	56.58
Zm00001d028655_P001	Maize	extracellular, mitochondrion	56.97	56.52
CDX80828	Canola	nucleus	64.54	56.06
CDY55544	Canola	nucleus	64.94	55.82
CDY10442	Canola	nucleus	61.35	55.2
Os03t0278300-02	Rice	nucleus	58.57	53.85
AT5G02530.1	Thale cress	plastid	62.55	53.77
TraesCS4A01G099300.1	Wheat	nucleus	54.58	52.29
TraesCS4B01G205000.1	Wheat	nucleus	54.98	51.11
TraesCS4D01G205900.1	Wheat	nucleus	54.18	50.37
TraesCS5D01G163300.1	Wheat	nucleus	54.98	50.0
TraesCS5A01G157900.1	Wheat	nucleus	54.98	50.0
TraesCS5B01G155800.1	Wheat	nucleus	54.98	49.82
HORVU5Hr1G049430.2	Barley	nucleus	55.38	49.47
Bra005728.1-P	Field mustard	nucleus, plastid	62.95	47.31
TraesCS4A01G178200.1	Wheat	nucleus, plastid	48.21	46.54
TraesCS4D01G133000.1	Wheat	plastid	47.81	46.15
Zm00001d047794_P001	Maize	nucleus	46.61	46.06
TraesCS4B01G138300.1	Wheat	nucleus, plastid	49.0	45.9
KRH75241	Soybean	plastid	24.3	45.86
Solyc11g011130.1.1	Tomato	nucleus	49.0	43.46
Solyc04g014460.2.1	Tomato	nucleus	45.42	41.91
EER98238	Sorghum	nucleus, plastid	41.83	41.18
Zm00001d019234_P002	Maize	extracellular	40.64	40.96
HORVU4Hr1G024270.1	Barley	plastid	49.4	40.52
Zm00001d005179_P001	Maize	plastid	31.87	38.28
TraesCS2D01G240400.1	Wheat	nucleus, plastid	39.84	37.17
TraesCS2B01G261300.1	Wheat	nucleus, plastid	39.84	37.04
TraesCS2A01G244000.1	Wheat	nucleus	32.27	35.22
OQU75650	Sorghum	nucleus	22.71	33.33
HORVU4Hr1G059090.4	Barley	plastid	46.61	33.05
Os07t0237100-00	Rice	nucleus	43.43	32.06
HORVU2Hr1G056980.6	Barley	nucleus	25.9	20.77

Protein Annotations

MapMan:16.11.1.2	Gene3D:3.30.70.330	InterPro:FoP_C	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	InterPro:IPR000504	InterPro:IPR012677	UniProt:K4DB34	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF13865	PFscan:PS50102	PANTHER:PTHR19965	PANTHER:PTHR19965:SF51	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SMART:SM01218	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc11g073280.1	EnsemblPlants:Solyc11g073280.1.1	UniParc:UPI000276A160
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr11:+:56287749..56290973

Molecular Weight (calculated)

26765.3 Da

IEP (calculated)

10.666

GRAVY (calculated)

-0.733

Length

251 amino acids

Sequence
(BLAST)

001: MAEAALDMTL DDLIKKNKTG TGGKPRGRGR GAASTSSAGP SRRVPNRSAN RAAPYSIAKA PQASWNHDMF EADQAVAFGQ AGGRASSIET GTKLYISNLD
101: YGVSNEDIKE LFSEIGDLKR YAVHYDRSGR SKGTAEVVFS RRQDALAGVK RFNNVQLDGK PMKIEIVGTN IVTPTAPFSN GAFGFGDTNG APRSGQVRGG
201: GFGRSRGGRG RDRGFRGGNR GWGRGGRGEK VSAEDLDADL MKYHTEAMQT N

Best Arabidopsis Sequence Match ( AT5G59950.5 )
(BLAST)

001: MSTGLDMSLD DMIAKNRKSR GGAGPARGTG SGSGPGPTRR NNPNRKSTRS APYQSAKAPE STWGHDMFSD RSEDHRSGRS SAGIETGTKL YISNLDYGVM
101: NEDIKELFAE VGELKRYTVH FDRSGRSKGT AEVVYSRRGD ALAAVKKYND VQLDGKPMKI EIVGTNLQTA AAPSGRPANG NSNGAPWSRG GQGRGGQQRG
201: GGRGGGGRGG GGRGRRPGKG PAEKISAEDL DADLDKYHSG DMETN

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4JXE3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.