CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80828
CDY10442
CDY40364
CDY55544

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02530.1	CDX80828	AT5G02530.1	21798944
AT5G02530.1	CDY10442	AT5G02530.1	21798944
AT5G02530.1	CDY40364	AT5G02530.1	21798944
AT5G02530.1	CDY55544	AT5G02530.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009581.1-P	Field mustard	nucleus	94.62	95.65
CDY40364	Canola	nucleus	93.55	94.22
CDY55544	Canola	nucleus	87.1	83.22
CDX80828	Canola	nucleus	86.02	83.05
AT5G02530.1	Thale cress	plastid	85.3	81.51
VIT_06s0004g04340.t01	Wine grape	nucleus	56.27	64.61
KRH24828	Soybean	nucleus	32.97	64.34
GSMUA_Achr6P23530_001	Banana	nucleus	53.76	62.76
GSMUA_Achr10P...	Banana	nucleus	53.76	62.76
GSMUA_AchrUn_...	Banana	nucleus	53.41	62.34
CDX80213	Canola	nucleus	52.33	62.13
KRH29829	Soybean	nucleus	54.84	61.94
CDY09236	Canola	nucleus	48.03	61.47
Solyc11g073280.1.1	Tomato	nucleus	55.2	61.35
KRH23040	Soybean	plastid	53.05	60.91
CDY31583	Canola	nucleus	51.97	60.67
VIT_13s0019g00640.t01	Wine grape	cytosol	34.41	60.0
Os11t0100200-00	Rice	nucleus	45.88	58.45
Os12t0100100-01	Rice	nucleus, plastid	46.95	57.46
Solyc10g086400.1.1	Tomato	nucleus	49.1	57.32
PGSC0003DMT400085575	Potato	nucleus, plastid	44.44	57.14
PGSC0003DMT400049444	Potato	cytosol	49.82	56.28
EER92463	Sorghum	nucleus	48.03	52.14
Zm00001d028655_P001	Maize	extracellular, mitochondrion	46.95	51.78
GSMUA_Achr6P15310_001	Banana	nucleus	43.37	51.49
PGSC0003DMT400049442	Potato	nucleus	41.58	51.33
TraesCS5D01G163300.1	Wheat	nucleus	50.54	51.09
TraesCS5A01G157900.1	Wheat	nucleus	50.18	50.72
TraesCS5B01G155800.1	Wheat	nucleus	50.18	50.54
HORVU5Hr1G049430.2	Barley	nucleus	50.9	50.53
Os03t0278300-02	Rice	nucleus	48.75	49.82
TraesCS4A01G099300.1	Wheat	nucleus	45.88	48.85
TraesCS4B01G205000.1	Wheat	nucleus	46.24	47.78
TraesCS4A01G178200.1	Wheat	nucleus, plastid	44.44	47.69
TraesCS4B01G138300.1	Wheat	nucleus, plastid	45.52	47.39
TraesCS4D01G133000.1	Wheat	plastid	44.09	47.31
TraesCS4D01G205900.1	Wheat	nucleus	45.52	47.04
KRH75241	Soybean	plastid	22.22	46.62
KRH07006	Soybean	cytosol	17.56	45.37
Zm00001d047794_P001	Maize	nucleus	40.86	44.88
Zm00001d019234_P002	Maize	extracellular	39.07	43.78
EER98238	Sorghum	nucleus, plastid	39.07	42.75
HORVU4Hr1G024270.1	Barley	plastid	45.52	41.5
Zm00001d005179_P001	Maize	plastid	30.82	41.15
TraesCS2D01G240400.1	Wheat	nucleus, plastid	38.71	40.15
TraesCS2B01G261300.1	Wheat	nucleus, plastid	38.71	40.0
KRH70494	Soybean	nucleus	36.92	38.72
CDY01711	Canola	nucleus	40.14	38.23
TraesCS2A01G244000.1	Wheat	nucleus	30.82	37.39
CDY49635	Canola	nucleus, plastid	37.99	36.81
CDY07496	Canola	nucleus, plastid	37.99	36.81
CDX74565	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	32.97	35.38
KRH01617	Soybean	nucleus	25.45	34.98
OQU75650	Sorghum	nucleus	20.43	33.33
HORVU4Hr1G059090.4	Barley	plastid	40.86	32.2
Os07t0237100-00	Rice	nucleus	38.71	31.76
HORVU2Hr1G056980.6	Barley	nucleus	24.73	22.04

Protein Annotations

MapMan:16.11.1.2	Gene3D:3.30.70.330	GO:A0A078FBS0	UniProt:A0A078FBS0	EnsemblPlants:CDY10442	ProteinID:CDY10442
ProteinID:CDY10442.1	InterPro:FoP_C	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00032365001	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF13865
PFscan:PS50102	PANTHER:PTHR19965	PANTHER:PTHR19965:SF51	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SMART:SM01218	SUPFAM:SSF54928	UniParc:UPI0004EF142E	SEG:seg	:	:

Description

BnaCnng03430DBnaCnng03430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FBS0]

Coordinates

chrLK032003:+:519307..520785

Molecular Weight (calculated)

29639.4 Da

IEP (calculated)

10.184

GRAVY (calculated)

-0.722

Length

279 amino acids

Sequence
(BLAST)

001: MAGGLDMSLD DLIKSNRKPT GSRGRGNGGS SRFGGGSGPS RRFSNRAGNR TAPYSRPLQQ QQAQDPMWQN DVFATDESVA AAFGHQSGGF GSVVGGSSIE
101: TGTKLYISNL DYGVSNEDIK ELFSEVGDLK RYGLHYDKSG RSKGTAEVVF SRRGDALAAV KRYNNVQLDG KLMKIEIVGT NLSAPTPTTP LAPVQFPFPS
201: NGILGNFNDN YNGGFNGNFN GNFRGRGGFM GRPRGGFGGG NFRGGRGGRG GRGGRDEKVS AEDLDAELDK YHKAAMETS

Best Arabidopsis Sequence Match ( AT5G02530.2 )
(BLAST)

001: MSGGLDMSLD DIIKSNRKPT GSRGRGGIGG GNNTGGRGGS GSNSGPSRRF ANRVGARTAP YSRPIQQQQA HDAMWQNDVF ATDASVAAAF GHHQTAVVGG
101: GSSIETGTKL YISNLDYGVS NEDIKELFSE VGDLKRYGIH YDRSGRSKGT AEVVFSRRGD ALAAVKRYNN VQLDGKLMKI EIVGTNLSAP ALPILATAQI
201: PFPTNGILGN FNENFNGNFN GNFNGNFRGR GGFMGRPRGG GFGGGNFRGG RGARGRGGRG SGGRGRDENV SAEDLDAELD KYHKEAMETS

Arabidopsis Description

ALY2THO complex subunit 4B [Source:UniProtKB/Swiss-Prot;Acc:Q8L719]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.