Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74565 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 77.13 | 86.92 |
| AT5G37720.1 | Thale cress | nucleus | 83.28 | 84.72 |
| CDY07496 | Canola | nucleus, plastid | 63.14 | 64.24 |
| CDY49635 | Canola | nucleus, plastid | 63.14 | 64.24 |
| PGSC0003DMT400040562 | Potato | nucleus | 56.66 | 58.87 |
| Solyc11g011130.1.1 | Tomato | nucleus | 56.66 | 58.66 |
| VIT_14s0006g01020.t01 | Wine grape | nucleus | 53.58 | 58.36 |
| PGSC0003DMT400060737 | Potato | nucleus | 54.61 | 57.97 |
| Solyc04g014460.2.1 | Tomato | nucleus | 53.58 | 57.72 |
| KRG97938 | Soybean | nucleus | 55.97 | 55.03 |
| KRH30937 | Soybean | nucleus | 55.63 | 54.7 |
| GSMUA_Achr5P05950_001 | Banana | nucleus | 46.42 | 49.82 |
| Zm00001d050357_P005 | Maize | plasma membrane | 45.39 | 49.44 |
| EES15014 | Sorghum | nucleus | 45.05 | 48.53 |
| GSMUA_Achr2P18730_001 | Banana | nucleus | 50.17 | 47.88 |
| CDX80213 | Canola | nucleus | 37.88 | 47.23 |
| CDY31583 | Canola | nucleus | 37.88 | 46.44 |
| TraesCS2B01G073800.1 | Wheat | nucleus | 43.69 | 45.88 |
| CDY09236 | Canola | nucleus | 34.13 | 45.87 |
| Os06t0256200-01 | Rice | nucleus | 45.73 | 45.58 |
| TraesCS2A01G060200.1 | Wheat | nucleus | 43.0 | 45.32 |
| TraesCS2D01G059800.1 | Wheat | nucleus | 43.34 | 45.2 |
| Os08t0427900-01 | Rice | nucleus | 44.03 | 45.1 |
| TraesCS7D01G207200.1 | Wheat | nucleus | 42.66 | 41.53 |
| EER89547 | Sorghum | nucleus | 43.34 | 41.37 |
| TraesCS7A01G204100.1 | Wheat | nucleus | 42.32 | 41.2 |
| TraesCS7B01G111100.1 | Wheat | nucleus | 42.32 | 41.2 |
| HORVU7Hr1G041520.2 | Barley | nucleus | 41.64 | 40.53 |
| CDY10442 | Canola | nucleus | 38.23 | 40.14 |
| CDY40364 | Canola | nucleus | 37.54 | 39.71 |
| CDX80828 | Canola | nucleus | 38.23 | 38.75 |
| HORVU2Hr1G011700.2 | Barley | nucleus | 44.03 | 38.39 |
| CDY55544 | Canola | nucleus | 38.23 | 38.36 |
| Zm00001d037352_P001 | Maize | plasma membrane | 39.25 | 37.58 |
Protein Annotations
| MapMan:16.11.1.2 | Gene3D:3.30.70.330 | GO:A0A078EKN4 | EnsemblPlants:CDY01711 | ProteinID:CDY01711 | ProteinID:CDY01711.1 |
| InterPro:FoP_C | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00112804001 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF13865 | PFscan:PS50102 | PANTHER:PTHR19965 |
| PANTHER:PTHR19965:SF33 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SMART:SM01218 | SUPFAM:SSF54928 |
| UniParc:UPI0004EF19D3 | SEG:seg | : | : | : | : |
Description
BnaC04g30410D
Coordinates
chrLK031928:+:750070..752628
Molecular Weight (calculated)
30953.6 Da
IEP (calculated)
11.955
GRAVY (calculated)
-0.780
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGALDMTLD ESIKRAKAAR SGGGGGGRGS SRRGRGGGRG NGPARRGPLA VNSRTSSFTI NKASSSSGIS YPVRRTRSVP WQNGLFEDGL RAAGVSGVDV
101: ETRLHITNLD NGVTNDDIRE LFSEIGELKR YAIHFDKNGR PSGTAEVVYP RRSDAIQALK KYNNVLLDGR PMRLEILGGN NYEAPPLSGR VNVNVSGLNG
201: RLKRTVVIQQ GGGRGIGRLR GRGRGGRGPA PTVNRLPIQN RQGGGRGGFR GGRGRGGRGR GGGRGNGKKP VEKSAADLDK DLESYHADAM NTS
101: ETRLHITNLD NGVTNDDIRE LFSEIGELKR YAIHFDKNGR PSGTAEVVYP RRSDAIQALK KYNNVLLDGR PMRLEILGGN NYEAPPLSGR VNVNVSGLNG
201: RLKRTVVIQQ GGGRGIGRLR GRGRGGRGPA PTVNRLPIQN RQGGGRGGFR GGRGRGGRGR GGGRGNGKKP VEKSAADLDK DLESYHADAM NTS
001: MSGALNMTLD EIVKRGKTAR SGGRGISRGR GRGRGGGGRG AGPARRGPLA VNARPSSFTI NKPVRRVRSL PWQSGLFEDG LRAAGASGVE VGTRLHVTNL
101: DQGVTNEDIR ELFSEIGEVE RYAIHYDKNG RPSGTAEVVY PRRSDAFQAL KKYNNVLLDG RPMRLEILGG NNSSEAPLSG RVNVNVTGLN GRLKRTVVIQ
201: QGGGGRGRVR GGRGGRGPAP TVSRRLPIHN QQGGGMRGGR GGFRARGRGN GGRGRGGGRG NGKKPVEKSA ADLDKDLESY HADAMNTS
101: DQGVTNEDIR ELFSEIGEVE RYAIHYDKNG RPSGTAEVVY PRRSDAFQAL KKYNNVLLDG RPMRLEILGG NNSSEAPLSG RVNVNVTGLN GRLKRTVVIQ
201: QGGGGRGRVR GGRGGRGPAP TVSRRLPIHN QQGGGMRGGR GGFRARGRGN GGRGRGGGRG NGKKPVEKSA ADLDKDLESY HADAMNTS
Arabidopsis Description
ALY4THO complex subunit 4D [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ72]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.