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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • nucleus 6
  • plastid 5
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra004158.1-P Field mustard nucleus, plastid 100.0 100.0
CDY49635 Canola nucleus, plastid 100.0 100.0
AT1G66260.1 Thale cress nucleus 75.69 73.9
CDY01711 Canola nucleus 64.24 63.14
CDX74565 Canola cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole 53.82 59.62
VIT_14s0006g01020.t01 Wine grape nucleus 52.43 56.13
Solyc04g014460.2.1 Tomato nucleus 51.74 54.78
KRG97938 Soybean nucleus 55.9 54.03
PGSC0003DMT400060737 Potato nucleus 51.74 53.99
KRH30937 Soybean nucleus 55.56 53.69
Solyc11g011130.1.1 Tomato nucleus 52.43 53.36
PGSC0003DMT400040562 Potato nucleus 52.08 53.19
GSMUA_Achr5P05950_001 Banana nucleus 45.49 47.99
Zm00001d050357_P005 Maize plasma membrane 43.4 46.47
EES15014 Sorghum nucleus 43.4 45.96
GSMUA_Achr2P18730_001 Banana nucleus 48.96 45.93
TraesCS2B01G073800.1 Wheat nucleus 43.4 44.8
TraesCS2A01G060200.1 Wheat nucleus 43.06 44.6
TraesCS2D01G059800.1 Wheat nucleus 43.06 44.13
Os06t0256200-01 Rice nucleus 44.1 43.2
CDY09236 Canola nucleus 32.29 42.66
Os08t0427900-01 Rice nucleus 42.01 42.31
TraesCS7D01G207200.1 Wheat nucleus 43.06 41.2
TraesCS7A01G204100.1 Wheat nucleus 43.06 41.2
HORVU7Hr1G041520.2 Barley nucleus 42.71 40.86
TraesCS7B01G111100.1 Wheat nucleus 42.71 40.86
CDX80213 Canola nucleus 33.33 40.85
EER89547 Sorghum nucleus 43.4 40.72
CDY31583 Canola nucleus 33.33 40.17
CDY10442 Canola nucleus 36.81 37.99
HORVU2Hr1G011700.2 Barley nucleus 43.75 37.5
CDX80828 Canola nucleus 37.5 37.37
CDY55544 Canola nucleus 37.5 36.99
CDY40364 Canola nucleus 35.42 36.82
Zm00001d037352_P001 Maize plasma membrane 37.15 34.97
Protein Annotations
MapMan:16.11.1.2Gene3D:3.30.70.330GO:A0A078F288UniProt:A0A078F288EnsemblPlants:CDY07496ProteinID:CDY07496
ProteinID:CDY07496.1ProteinID:CDY49635.1ncoils:CoilInterPro:FoP_CGO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0005488EnsemblPlantsGene:GSBRNA2T00124500001InterPro:IPR000504InterPro:IPR012677InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076PFAM:PF13865PFscan:PS50102PANTHER:PTHR19965PANTHER:PTHR19965:SF33InterPro:RBD_domain_sf
InterPro:RRM_domSMART:SM00360SMART:SM01218SUPFAM:SSF54928UniParc:UPI00025414F2SEG:seg
Description
BnaA07g25750DBnaA07g25750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F288]
Coordinates
chrLK031978:-:974764..977359
Molecular Weight (calculated)
30779.9 Da
IEP (calculated)
11.530
GRAVY (calculated)
-0.686
Length
288 amino acids
Sequence
(BLAST)
001: MADSLSMSLD EMVKRSKAAK KSAGKGVSRG GAKGAGRGAG GPVRRGPLAV KARPSSFSNK ASSRIWDLLS LNRRKKNLPW QNGLFEESMR SVGVTGIEVG
101: TTVYVTNLDQ GVTNEDIREL FGEIGEMKRY AIHYDQNGRP NGSAEVVYMR RSDAFQAMKR YNNVLLDGRS MKLEILGGNN EVAPVAARVN VTGLNGRMKR
201: TVSIGQGIRG GRGRGRSAAP SMRRLPIGNQ QGGGVRSGRG GFRGRGRGQA GGGRGNKGGR GGKKAVEKSA EELDKDLETY HAEAMNIS
Best Arabidopsis Sequence Match ( AT1G66260.2 )
(BLAST)
001: MSDALNMTLD EIVKKSKSER SAAARSGGKG VSRKSGRGRG GPNGVVGGGR GGGPVRRGPL AVNTRPSSSF SINKLARRKR SLPWQNQNDL YEETLRAVGV
101: SGVEVGTTVY ITNLDQGVTN EDIRELYAEI GELKRYAIHY DKNGRPSGSA EVVYMRRSDA IQAMRKYNNV LLDGRPMKLE ILGGNTESAP VAARVNVTGL
201: NGRMKRSVFI GQGVRGGRVG RGRGSGPSGR RLPLQQNQQG GVTAGRGGFR GRGRGNGGGR GNKSGGRGGK KPVEKSAADL DKDLESYHAE AMNIS
Arabidopsis Description
ALY3THO complex subunit 4C [Source:UniProtKB/Swiss-Prot;Acc:Q94EH8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.